Variant report

Variant	rs61848604
Chromosome Location	chr1:211288337-211288338
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10863877	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11119694	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11119696	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11579711	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12406301	0.93[ASN][1000 genomes]
rs12408290	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1338353	0.84[ASN][1000 genomes]
rs1538287	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1572646	0.86[EUR][1000 genomes]
rs1582137	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17017226	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17188895	0.86[ASN][1000 genomes]
rs1933524	0.84[ASN][1000 genomes]
rs2211039	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28826269	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3111218	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3111220	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3111221	0.84[ASN][1000 genomes]
rs3111224	0.84[ASN][1000 genomes]
rs3111226	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3120775	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3120776	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3120777	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3120778	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3125850	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3125852	0.84[ASN][1000 genomes]
rs3811396	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3828021	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61099314	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6540658	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6540659	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6540666	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6540667	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6540669	0.84[ASN][1000 genomes]
rs6669706	0.88[ASN][1000 genomes]
rs6684075	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6700303	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7516636	0.86[ASN][1000 genomes]
rs7530182	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs867849	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9430056	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9430057	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9430058	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211280800-211290800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:211280800-211300200	Weak transcription	HSMMtube	muscle
3	chr1:211285600-211299400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:211287000-211289600	Weak transcription	HSMM	muscle
5	chr1:211287800-211291600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:211288000-211292000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links