Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50599562..50602600-chr10:50603375..50606319,3	MCF-7	breast:
2	chr10:50598458..50600419-chr10:50603443..50605608,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165606	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12572851	0.82[EUR][1000 genomes]
rs12572858	0.81[EUR][1000 genomes]
rs17009950	0.81[EUR][1000 genomes]
rs17009953	0.81[EUR][1000 genomes]
rs17176872	0.81[EUR][1000 genomes]
rs17176977	0.82[EUR][1000 genomes]
rs17177005	0.86[EUR][1000 genomes]
rs17783577	0.82[EUR][1000 genomes]
rs17783607	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3849153	0.87[EUR][1000 genomes]
rs4012237	0.87[EUR][1000 genomes]
rs41301105	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57455400	0.81[EUR][1000 genomes]
rs61848624	0.81[EUR][1000 genomes]
rs61848625	0.81[EUR][1000 genomes]
rs61848626	0.88[EUR][1000 genomes]
rs61848627	0.81[EUR][1000 genomes]
rs61848634	0.82[EUR][1000 genomes]
rs61848635	0.82[EUR][1000 genomes]
rs61848637	0.83[EUR][1000 genomes]
rs61848639	0.84[EUR][1000 genomes]
rs61848644	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848646	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61850964	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311930	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915692	0.92[EUR][1000 genomes]
rs7916121	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50600000-50600600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:50600200-50600400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain

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