Variant report

Variant	rs61848644
Chromosome Location	chr10:50603105-50603106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr10:50602952-50604527	H1-hESC	embryonic stem cell:	n/a	chr10:50604253-50604262
2	MAX	chr10:50602793-50603428	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTBP2	chr10:50602676-50604541	H1-hESC	embryonic stem cell:	n/a	n/a
4	ZNF143	chr10:50603080-50603446	H1-hESC	embryonic stem cell:	n/a	chr10:50603129-50603147
5	EP300	chr10:50603041-50605982	SK-N-SH	brain:	n/a	chr10:50603639-50603655 chr10:50603985-50603994 chr10:50605960-50605976 chr10:50603939-50603955 chr10:50603571-50603581 chr10:50604287-50604297
6	MXI1	chr10:50602745-50607042	SK-N-SH	brain:	n/a	chr10:50602885-50602894 chr10:50604253-50604262 chr10:50604255-50604264
7	SUZ12	chr10:50602816-50607506	NT2-D1	testis:	n/a	n/a

Variant related genes	Relation type
DRGX	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12572851	0.82[EUR][1000 genomes]
rs12572858	0.81[EUR][1000 genomes]
rs17009950	0.81[EUR][1000 genomes]
rs17009953	0.81[EUR][1000 genomes]
rs17176872	0.81[EUR][1000 genomes]
rs17176977	0.82[EUR][1000 genomes]
rs17177005	0.86[EUR][1000 genomes]
rs17783577	0.82[EUR][1000 genomes]
rs17783607	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3849153	0.87[EUR][1000 genomes]
rs4012237	0.87[EUR][1000 genomes]
rs41301105	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57455400	0.81[EUR][1000 genomes]
rs61848624	0.81[EUR][1000 genomes]
rs61848625	0.81[EUR][1000 genomes]
rs61848626	0.88[EUR][1000 genomes]
rs61848627	0.81[EUR][1000 genomes]
rs61848634	0.82[EUR][1000 genomes]
rs61848635	0.82[EUR][1000 genomes]
rs61848637	0.83[EUR][1000 genomes]
rs61848639	0.84[EUR][1000 genomes]
rs61848642	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848646	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61850964	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311930	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915692	0.92[EUR][1000 genomes]
rs7916121	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50602200-50604200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:50602600-50604200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr10:50602600-50604200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr10:50602600-50604200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50602600-50604400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr10:50602800-50603200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:50602800-50603200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
8	chr10:50602800-50603400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:50602800-50603600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr10:50602800-50604000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:50602800-50604000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr10:50602800-50604200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:50602800-50604200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:50602800-50604200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
15	chr10:50602800-50604200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr10:50602800-50604200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:50602800-50604200	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr10:50602800-50604400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:50602800-50604800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
20	chr10:50602800-50606600	Enhancers	Pancreas	Pancrea
21	chr10:50602800-50607200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr10:50603000-50603200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
23	chr10:50603000-50603200	Enhancers	Right Atrium	heart
24	chr10:50603000-50603200	Bivalent/Poised TSS	Right Ventricle	heart
25	chr10:50603000-50603600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:50603000-50603600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:50603000-50603800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:50603000-50603800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
29	chr10:50603000-50604000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:50603000-50604000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:50603000-50604000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
32	chr10:50603000-50604200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:50603000-50604400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
34	chr10:50603000-50604400	Bivalent Enhancer	Brain Substantia Nigra	brain
35	chr10:50603000-50604600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr10:50603000-50604600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
37	chr10:50603000-50605000	Bivalent Enhancer	Brain Hippocampus Middle	brain

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