Variant report
| Variant | rs61848648 |
|---|---|
| Chromosome Location | chr1:211342327-211342328 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | SETDB1 | chr1:211342212-211343078 | U2OS | brain: | n/a | n/a |
| 2 | CBX3 | chr1:211342178-211342503 | K562 | blood: | n/a | n/a |
| 3 | KAP1 | chr1:211342203-211342510 | HEK293 | kidney: | n/a | n/a |
| 4 | CTCF | chr1:211342301-211342380 | LNCaP | prostate: | n/a | n/a |
| 5 | ZNF143 | chr1:211342305-211342522 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 6 | KAP1 | chr1:211342222-211343212 | K562 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234004 | TF binding region |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10863877 | 0.82[ASN][1000 genomes] |
| rs11119694 | 0.93[ASN][1000 genomes] |
| rs11119696 | 0.93[ASN][1000 genomes] |
| rs11579711 | 0.84[ASN][1000 genomes] |
| rs12406301 | 0.84[ASN][1000 genomes] |
| rs12408290 | 0.93[ASN][1000 genomes] |
| rs1338353 | 0.93[ASN][1000 genomes] |
| rs1538287 | 0.84[ASN][1000 genomes] |
| rs1582137 | 0.93[ASN][1000 genomes] |
| rs17017226 | 0.84[ASN][1000 genomes] |
| rs17188895 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1933524 | 0.93[ASN][1000 genomes] |
| rs2211039 | 0.93[ASN][1000 genomes] |
| rs28826269 | 0.89[ASN][1000 genomes] |
| rs3111218 | 0.93[ASN][1000 genomes] |
| rs3111220 | 0.93[ASN][1000 genomes] |
| rs3111221 | 0.93[ASN][1000 genomes] |
| rs3111224 | 0.93[ASN][1000 genomes] |
| rs3111226 | 0.93[ASN][1000 genomes] |
| rs3120775 | 0.93[ASN][1000 genomes] |
| rs3120776 | 0.93[ASN][1000 genomes] |
| rs3120777 | 0.93[ASN][1000 genomes] |
| rs3120778 | 0.93[ASN][1000 genomes] |
| rs3125850 | 0.93[ASN][1000 genomes] |
| rs3125852 | 0.93[ASN][1000 genomes] |
| rs3811396 | 0.84[ASN][1000 genomes] |
| rs3828021 | 0.84[ASN][1000 genomes] |
| rs6540658 | 0.84[ASN][1000 genomes] |
| rs6540659 | 0.84[ASN][1000 genomes] |
| rs6540666 | 0.93[ASN][1000 genomes] |
| rs6540667 | 0.93[ASN][1000 genomes] |
| rs6540669 | 0.93[ASN][1000 genomes] |
| rs6669706 | 0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6684075 | 0.93[ASN][1000 genomes] |
| rs6700303 | 0.93[ASN][1000 genomes] |
| rs7516636 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7530182 | 0.93[ASN][1000 genomes] |
| rs867849 | 0.84[ASN][1000 genomes] |
| rs9430056 | 0.93[ASN][1000 genomes] |
| rs9430057 | 0.90[ASN][1000 genomes] |
| rs9430058 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv945276 | chr1:211341161-211348032 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:211342000-211342600 | Active TSS | Primary T cells from cord blood | blood |
