Variant report

Variant	rs61848963
Chromosome Location	chr1:211030583-211030584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61848969	0.83[EUR][1000 genomes]
rs61848971	0.82[EUR][1000 genomes]
rs61851019	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6665163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520509	chr1:211021787-211041590	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211024800-211035400	Weak transcription	HSMM	muscle
2	chr1:211024800-211046800	Weak transcription	HSMMtube	muscle
3	chr1:211026800-211030600	Weak transcription	Brain Angular Gyrus	brain
4	chr1:211027000-211030800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:211027000-211035400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:211027200-211030600	Weak transcription	Brain Substantia Nigra	brain
7	chr1:211029800-211032600	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:211030000-211030600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:211030400-211031200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:211030400-211031400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:211030400-211031400	Enhancers	Brain Anterior Caudate	brain
12	chr1:211030400-211031600	Enhancers	Brain Hippocampus Middle	brain
13	chr1:211030400-211031800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:211030400-211032000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links