Variant report

Variant	rs61849024
Chromosome Location	chr1:211152436-211152437
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11119654	0.96[ASN][1000 genomes]
rs11119668	0.84[ASN][1000 genomes]
rs11806852	0.90[ASN][1000 genomes]
rs12021704	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12022715	0.96[ASN][1000 genomes]
rs12022739	0.96[ASN][1000 genomes]
rs12025525	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12026311	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12026374	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12027535	0.89[ASN][1000 genomes]
rs12028941	0.84[ASN][1000 genomes]
rs12030715	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12030905	0.84[ASN][1000 genomes]
rs12036999	0.94[ASN][1000 genomes]
rs12039302	0.99[ASN][1000 genomes]
rs12043937	0.96[ASN][1000 genomes]
rs12043952	0.94[ASN][1000 genomes]
rs12046391	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12070402	0.96[ASN][1000 genomes]
rs12406562	0.98[ASN][1000 genomes]
rs12407609	0.87[ASN][1000 genomes]
rs1501544	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501545	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501548	0.96[ASN][1000 genomes]
rs1501549	0.96[ASN][1000 genomes]
rs1501550	0.96[ASN][1000 genomes]
rs1532682	0.96[ASN][1000 genomes]
rs2358210	0.90[ASN][1000 genomes]
rs4570464	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4575146	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56999636	1.00[ASN][1000 genomes]
rs57179129	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57655345	0.93[ASN][1000 genomes]
rs58255417	0.85[ASN][1000 genomes]
rs61848562	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61848568	0.85[ASN][1000 genomes]
rs61848992	0.90[ASN][1000 genomes]
rs61849000	0.95[ASN][1000 genomes]
rs61849015	0.99[ASN][1000 genomes]
rs61850228	0.89[ASN][1000 genomes]
rs6540636	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6540638	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6540648	0.85[ASN][1000 genomes]
rs6659020	0.85[ASN][1000 genomes]
rs6659135	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6663672	0.85[ASN][1000 genomes]
rs6666287	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6666342	0.85[ASN][1000 genomes]
rs6675213	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6678568	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6680997	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6687069	0.82[ASN][1000 genomes]
rs6688920	0.84[ASN][1000 genomes]
rs6689715	0.96[ASN][1000 genomes]
rs7514606	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7515316	0.91[ASN][1000 genomes]
rs7518841	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7523929	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7537597	0.87[ASN][1000 genomes]
rs7551412	0.97[ASN][1000 genomes]
rs7553997	0.99[ASN][1000 genomes]
rs7554723	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524740	chr1:211143108-211155614	Enhancers Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211151800-211152600	Enhancers	A549	lung
2	chr1:211152000-211152800	Enhancers	HSMMtube	muscle
3	chr1:211152200-211152600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:211152200-211152600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:211152400-211153200	Weak transcription	HSMM	muscle
6	chr1:211152400-211154200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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