Variant report

Variant	rs61849745
Chromosome Location	chr10:53003209-53003210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10996321	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12250170	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61849758	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085126	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7085957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088380	0.97[EUR][1000 genomes]
rs7917098	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	esv2757383	chr10:52995974-53015583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2759750	chr10:52995974-53015583	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52992000-53006200	Weak transcription	Aorta	Aorta
2	chr10:52992200-53003600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:52992200-53009600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:52999800-53004600	Weak transcription	Right Atrium	heart
5	chr10:53000000-53004400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:53000400-53004200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:53000600-53004000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:53001200-53005800	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:53001800-53003400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:53001800-53004200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:53001800-53004800	Enhancers	Psoas Muscle	Psoas
12	chr10:53001800-53005800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:53002000-53003600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:53002400-53003800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:53002800-53003600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr10:53002800-53003600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:53003000-53004400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:53003200-53003600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr10:53003200-53004000	Weak transcription	Fetal Brain Male	brain
20	chr10:53003200-53004200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:53003200-53004200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr10:53003200-53004400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:53003200-53004600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:53003200-53007800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links