Variant report

Variant	rs61849800
Chromosome Location	chr1:225261162-225261163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10915741	1.00[AFR][1000 genomes]
rs10915754	1.00[AFR][1000 genomes]
rs11577104	1.00[AFR][1000 genomes]
rs11578729	0.81[ASN][1000 genomes]
rs11580638	0.81[ASN][1000 genomes]
rs11585032	0.81[ASN][1000 genomes]
rs12402229	0.83[ASN][1000 genomes]
rs12403292	0.81[ASN][1000 genomes]
rs12403752	0.82[ASN][1000 genomes]
rs12403778	0.81[ASN][1000 genomes]
rs12408302	0.83[ASN][1000 genomes]
rs12410491	0.83[ASN][1000 genomes]
rs12411172	0.83[ASN][1000 genomes]
rs12411174	0.83[ASN][1000 genomes]
rs12729289	0.81[ASN][1000 genomes]
rs12733373	0.83[ASN][1000 genomes]
rs12736406	0.83[ASN][1000 genomes]
rs12740067	0.82[ASN][1000 genomes]
rs12754116	0.83[ASN][1000 genomes]
rs12758819	0.83[ASN][1000 genomes]
rs16844054	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16844408	0.83[ASN][1000 genomes]
rs16858926	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1842332	0.83[ASN][1000 genomes]
rs1847906	0.83[ASN][1000 genomes]
rs1847907	0.83[ASN][1000 genomes]
rs34256167	0.81[ASN][1000 genomes]
rs34304596	0.81[ASN][1000 genomes]
rs34305765	0.81[ASN][1000 genomes]
rs34436845	0.81[ASN][1000 genomes]
rs34468096	0.82[ASN][1000 genomes]
rs34517951	0.82[ASN][1000 genomes]
rs34530213	0.83[ASN][1000 genomes]
rs34764920	0.81[ASN][1000 genomes]
rs34766551	0.83[ASN][1000 genomes]
rs34778535	0.83[ASN][1000 genomes]
rs35150136	0.80[ASN][1000 genomes]
rs35181350	0.83[ASN][1000 genomes]
rs35553993	0.80[ASN][1000 genomes]
rs35852721	0.82[ASN][1000 genomes]
rs35948433	0.81[ASN][1000 genomes]
rs36053633	0.82[ASN][1000 genomes]
rs4319288	0.81[ASN][1000 genomes]
rs4623662	0.81[ASN][1000 genomes]
rs4653413	0.81[ASN][1000 genomes]
rs4653607	0.83[ASN][1000 genomes]
rs55680010	0.83[ASN][1000 genomes]
rs55738724	0.81[ASN][1000 genomes]
rs55770610	0.83[ASN][1000 genomes]
rs56150737	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56267629	1.00[AFR][1000 genomes]
rs57650955	0.81[ASN][1000 genomes]
rs61849836	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61851475	0.80[ASN][1000 genomes]
rs61851478	0.81[ASN][1000 genomes]
rs61851479	0.81[ASN][1000 genomes]
rs61851481	0.81[ASN][1000 genomes]
rs61851489	0.81[ASN][1000 genomes]
rs61852092	1.00[AFR][1000 genomes]
rs72748625	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004856	chr1:225228287-225271137	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv526708	chr1:225229866-225273248	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1808493	chr1:225232264-225267066	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv945671	chr1:225242969-225311101	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225256400-225277400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:225257000-225262600	Weak transcription	A549	lung
3	chr1:225258000-225264200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:225259000-225263000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr1:225259400-225262000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:225259800-225264600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:225260200-225261200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:225260400-225261200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:225260400-225261200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr1:225260400-225261200	Strong transcription	Pancreas	Pancrea
11	chr1:225260400-225261400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:225260600-225263000	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr1:225260600-225263000	ZNF genes & repeats	Fetal Stomach	stomach
14	chr1:225260800-225261200	Strong transcription	Ovary	ovary
15	chr1:225260800-225262200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:225261000-225261200	ZNF genes & repeats	Gastric	stomach
17	chr1:225261000-225261400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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