Variant report

Variant	rs61850964
Chromosome Location	chr10:50608291-50608292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr10:50608253-50608452	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:50608262-50608312	MCF-7	breast:	n/a
2	chr10:50608262-50608312	RPTEC	kidney:	n/a
3	chr10:50608262-50608312	A549	lung:	n/a
4	chr10:50608262-50608312	Caco-2	colon:	n/a
5	chr10:50608262-50608312	AG09319	gingival:	n/a
6	chr10:50608262-50608312	NT2-D1	testis:	n/a
7	chr10:50608262-50608312	HIPEpiC	eye:	n/a
8	chr10:50608262-50608312	PANC-1	pancreas:	n/a
9	chr10:50608262-50608312	LNCaP	prostate:	n/a
10	chr10:50608262-50608312	SK-N-SH_RA	brain:	n/a
11	chr10:50608262-50608312	Jurkat	blood:	n/a
12	chr10:50608262-50608312	AG04450	lung:	fetal
13	chr10:50608262-50608312	HCT-116	colon:	n/a
14	chr10:50608262-50608312	SKMC	muscle:	n/a
15	chr10:50608262-50608312	GM12892	blood:	n/a
16	chr10:50608262-50608312	NHBE	bronchial:	n/a
17	chr10:50608262-50608312	K562	blood:	n/a
18	chr10:50608262-50608312	HCM	heart:	n/a
19	chr10:50608262-50608312	MCF10A-Er-Src	breast:	n/a
20	chr10:50608262-50608312	AoSMC	blood vessel:	n/a
21	chr10:50608262-50608312	HRE	kidney:	n/a
22	chr10:50608262-50608312	Hepatocyte	liver:	n/a
23	chr10:50608262-50608312	GM12891	blood:	n/a
24	chr10:50608262-50608312	U87	brain:	n/a
25	chr10:50608262-50608312	ovcar-3	ovarian:	n/a
26	chr10:50608262-50608312	BJ	skin:	n/a
27	chr10:50608262-50608312	AG10803	skin:	n/a
28	chr10:50608262-50608312	HepG2	liver:	n/a
29	chr10:50608262-50608312	HAEpiC	amniotic membrane:	n/a
30	chr10:50608262-50608312	AG04449	skin:	fetal
31	chr10:50608262-50608312	HUVEC	blood vessel:	n/a
32	chr10:50608262-50608312	AG09309	skin:	n/a
33	chr10:50608262-50608312	HPAEpiC	pulmonary alveolar:	n/a
34	chr10:50608262-50608312	HCF	heart:	n/a
35	chr10:50608262-50608312	PrEC	prostate:	n/a
36	chr10:50608262-50608312	HNPCEpiC	eye:	n/a
37	chr10:50608262-50608312	CMK	blood:	n/a
38	chr10:50608262-50608312	ProgFib	skin:	n/a
39	chr10:50608262-50608312	GM12878	blood:	n/a
40	chr10:50608262-50608312	IMR90	lung:	fetal
41	chr10:50608262-50608312	BE2_C	brain:	n/a
42	chr10:50608262-50608312	SK-N-MC	brain:	n/a
43	chr10:50608262-50608312	HMEC	breast:	n/a
44	chr10:50608262-50608312	HCPEpiC	choroid plexus:	n/a
45	chr10:50608262-50608312	HRCEpiC	kidney:	n/a
46	chr10:50608262-50608312	GM06990	blood:	n/a
47	chr10:50608262-50608312	NB4	blood:	n/a
48	chr10:50608262-50608312	PFSK-1	brain:	n/a
49	chr10:50608262-50608312	HEEpiC	esophagus:	n/a
50	chr10:50608262-50608312	SK-N-SH	brain:	n/a

No data

Variant related genes	Relation type
DRGX	TF binding region
DRGX	CpG island

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10508913	0.89[EUR][1000 genomes]
rs12572851	0.92[EUR][1000 genomes]
rs12572858	0.91[EUR][1000 genomes]
rs17009950	0.91[EUR][1000 genomes]
rs17009953	0.91[EUR][1000 genomes]
rs17176872	0.91[EUR][1000 genomes]
rs17176977	0.92[EUR][1000 genomes]
rs17177005	0.96[EUR][1000 genomes]
rs17783577	0.92[EUR][1000 genomes]
rs17783607	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3849153	0.82[EUR][1000 genomes]
rs4012237	0.82[EUR][1000 genomes]
rs41301105	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57455400	0.91[EUR][1000 genomes]
rs61848624	0.91[EUR][1000 genomes]
rs61848625	0.91[EUR][1000 genomes]
rs61848626	0.84[EUR][1000 genomes]
rs61848627	0.91[EUR][1000 genomes]
rs61848634	0.92[EUR][1000 genomes]
rs61848635	0.92[EUR][1000 genomes]
rs61848637	0.93[EUR][1000 genomes]
rs61848639	0.95[EUR][1000 genomes]
rs61848642	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848644	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848646	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311930	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915692	0.87[EUR][1000 genomes]
rs7916121	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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