Variant report

Variant	rs61865312
Chromosome Location	chr10:119126662-119126663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:119112310..119114001-chr10:119126001..119128034,2	K562	blood:
2	chr10:119125616..119127827-chr10:119133823..119136308,2	MCF-7	breast:
3	chr10:119079349..119081397-chr10:119125139..119127779,2	K562	blood:
4	chr10:119125631..119127715-chr10:119133570..119135526,3	K562	blood:
5	chr10:119125465..119127483-chr10:119132943..119136039,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11815112	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816871	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17545115	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545387	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17546173	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628116	0.82[EUR][1000 genomes]
rs61865314	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865317	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900213	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902117	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908406	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909861	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61865312	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
3	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:119109400-119130000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:119111800-119129000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:119112600-119132800	Weak transcription	Gastric	stomach
7	chr10:119114200-119128200	Weak transcription	Thymus	Thymus
8	chr10:119119200-119127200	Enhancers	NHEK	skin
9	chr10:119119600-119127200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:119120000-119130800	Weak transcription	Brain Anterior Caudate	brain
11	chr10:119120000-119132200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:119121000-119127200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:119121400-119130000	Enhancers	Fetal Intestine Large	intestine
14	chr10:119121600-119130600	Enhancers	HepG2	liver
15	chr10:119122400-119130000	Enhancers	Fetal Intestine Small	intestine
16	chr10:119122800-119126800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr10:119123000-119128200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr10:119123000-119129200	Weak transcription	Brain Germinal Matrix	brain
19	chr10:119123200-119127400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:119123600-119130400	Weak transcription	Brain Substantia Nigra	brain
21	chr10:119123800-119131000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:119123800-119131000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:119123800-119131600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:119124000-119128600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:119124000-119129000	Weak transcription	HSMM	muscle
26	chr10:119124000-119129200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:119124000-119129200	Weak transcription	NHDF-Ad	bronchial
28	chr10:119124000-119132000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:119124200-119126800	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr10:119124200-119127400	Enhancers	Primary hematopoietic stem cells	blood
31	chr10:119124200-119129000	Weak transcription	Fetal Brain Male	brain
32	chr10:119124200-119130000	Weak transcription	Adipose Nuclei	Adipose
33	chr10:119124200-119131000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:119124200-119131000	Weak transcription	Small Intestine	intestine
35	chr10:119124200-119131600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr10:119124400-119128400	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr10:119124400-119129000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:119124400-119129200	Weak transcription	Osteobl	bone
39	chr10:119124400-119129400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:119124400-119129800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:119124400-119130000	Weak transcription	Fetal Heart	heart
42	chr10:119124400-119130800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:119124400-119130800	Enhancers	Liver	Liver
44	chr10:119124400-119130800	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:119124400-119130800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:119124400-119130800	Weak transcription	Spleen	Spleen
47	chr10:119124400-119131000	Weak transcription	NHLF	lung
48	chr10:119124400-119131200	Weak transcription	Colonic Mucosa	Colon
49	chr10:119124400-119131400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:119124400-119132000	Weak transcription	Right Ventricle	heart

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