Variant report

Variant	rs61876873
Chromosome Location	chr11:9785323-9785324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9779761..9781749-chr11:9784316..9786862,4	K562	blood:

Variant related genes	Relation type
ENSG00000246273	Chromatin interaction
ENSG00000245522	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10500709	1.00[ASN][1000 genomes]
rs11042521	1.00[ASN][1000 genomes]
rs11042525	1.00[ASN][1000 genomes]
rs11601125	1.00[ASN][1000 genomes]
rs11601212	1.00[ASN][1000 genomes]
rs11601940	1.00[ASN][1000 genomes]
rs11603291	1.00[ASN][1000 genomes]
rs11607169	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12416694	1.00[ASN][1000 genomes]
rs12416904	1.00[ASN][1000 genomes]
rs12416993	1.00[ASN][1000 genomes]
rs12419046	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419471	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17269812	1.00[ASN][1000 genomes]
rs55693083	1.00[ASN][1000 genomes]
rs55782221	1.00[ASN][1000 genomes]
rs61876881	1.00[ASN][1000 genomes]
rs61876891	1.00[ASN][1000 genomes]
rs61876892	0.83[AFR][1000 genomes]
rs61876894	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9780200-9786600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:9780600-9813200	Weak transcription	Small Intestine	intestine
3	chr11:9780800-9786600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:9780800-9788600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:9780800-9788600	Enhancers	Fetal Heart	heart
6	chr11:9780800-9794200	Enhancers	Fetal Muscle Leg	muscle
7	chr11:9781000-9786800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:9781200-9789400	Enhancers	Placenta	Placenta
9	chr11:9781400-9786600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:9781400-9795200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:9781400-9800800	Weak transcription	Fetal Brain Female	brain
12	chr11:9781600-9785800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:9781600-9786400	Weak transcription	Fetal Kidney	kidney
14	chr11:9781600-9786600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:9781600-9786800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:9781600-9798200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:9781600-9801000	Weak transcription	Primary T cells from cord blood	blood
18	chr11:9781600-9809000	Weak transcription	Fetal Brain Male	brain
19	chr11:9781800-9786000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:9781800-9786600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:9781800-9786600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:9781800-9790800	Enhancers	NHDF-Ad	bronchial
23	chr11:9781800-9799200	Weak transcription	Primary B cells from cord blood	blood
24	chr11:9781800-9799200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:9781800-9801200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:9781800-9801600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr11:9782000-9785400	Weak transcription	Psoas Muscle	Psoas
28	chr11:9782000-9798000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:9782200-9785400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:9782200-9785600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:9782200-9786000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:9782200-9786200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:9782200-9786600	Weak transcription	Fetal Intestine Large	intestine
34	chr11:9782200-9786600	Weak transcription	GM12878-XiMat	blood
35	chr11:9782200-9786800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:9782200-9786800	Weak transcription	Pancreas	Pancrea
37	chr11:9782200-9787000	Weak transcription	Lung	lung
38	chr11:9782200-9787000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr11:9782200-9787800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:9782200-9796200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:9782400-9786200	Weak transcription	HUVEC	blood vessel
42	chr11:9782400-9786600	Weak transcription	Fetal Intestine Small	intestine
43	chr11:9782400-9786600	Weak transcription	Hela-S3	cervix
44	chr11:9782400-9787000	Weak transcription	Colonic Mucosa	Colon
45	chr11:9782400-9791600	Weak transcription	A549	lung
46	chr11:9782400-9799400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:9782600-9785400	Weak transcription	Ovary	ovary
48	chr11:9782600-9786200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:9782600-9786200	Weak transcription	Adipose Nuclei	Adipose
50	chr11:9782600-9786200	Weak transcription	Fetal Stomach	stomach

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