Variant report

Variant	rs61876891
Chromosome Location	chr11:9807841-9807842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9807438..9810264-chr11:10314419..10316538,2	MCF-7	breast:
2	chr11:9807314..9809632-chr11:10328158..10330110,2	K562	blood:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10500709	1.00[ASN][1000 genomes]
rs11042521	1.00[ASN][1000 genomes]
rs11042525	1.00[ASN][1000 genomes]
rs11600797	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11601125	1.00[ASN][1000 genomes]
rs11601212	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601940	1.00[ASN][1000 genomes]
rs11603291	1.00[ASN][1000 genomes]
rs12416694	1.00[ASN][1000 genomes]
rs12416904	1.00[ASN][1000 genomes]
rs12416993	1.00[ASN][1000 genomes]
rs12419046	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419471	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17269812	1.00[ASN][1000 genomes]
rs55693083	1.00[ASN][1000 genomes]
rs55782221	1.00[ASN][1000 genomes]
rs61876873	1.00[ASN][1000 genomes]
rs61876881	1.00[ASN][1000 genomes]
rs61876892	0.80[EUR][1000 genomes]
rs61876894	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9780600-9813200	Weak transcription	Small Intestine	intestine
2	chr11:9781600-9809000	Weak transcription	Fetal Brain Male	brain
3	chr11:9795200-9812800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:9797400-9821800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:9797800-9811800	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:9798000-9809000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:9798200-9810400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr11:9798600-9811600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:9799000-9809200	Strong transcription	Fetal Stomach	stomach
10	chr11:9799200-9812000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:9799200-9812200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:9799600-9810600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:9799600-9823400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:9799800-9811600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr11:9799800-9812000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:9799800-9812200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:9799800-9812200	Strong transcription	Liver	Liver
18	chr11:9799800-9814200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:9800200-9823800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:9801200-9809600	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:9801600-9823800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:9802600-9810600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:9802800-9808200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:9802800-9808200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:9802800-9809400	Weak transcription	HMEC	breast
26	chr11:9802800-9810200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:9803000-9823400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr11:9803000-9823400	Weak transcription	Psoas Muscle	Psoas
29	chr11:9803200-9808000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr11:9803200-9808000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr11:9803200-9809000	Weak transcription	Fetal Thymus	thymus
32	chr11:9803200-9809000	Weak transcription	Right Ventricle	heart
33	chr11:9803200-9809800	Weak transcription	HUVEC	blood vessel
34	chr11:9803200-9811400	Weak transcription	Brain Substantia Nigra	brain
35	chr11:9803200-9828600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:9803200-9828600	Weak transcription	Gastric	stomach
37	chr11:9803200-9828800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr11:9803400-9811200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:9803600-9808000	Weak transcription	Fetal Kidney	kidney
40	chr11:9803600-9808200	Weak transcription	Brain Angular Gyrus	brain
41	chr11:9803600-9809400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:9803800-9808800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:9804400-9809800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:9804600-9809000	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:9804600-9812000	Strong transcription	Fetal Lung	lung
46	chr11:9804800-9810200	Strong transcription	Primary T cells from cord blood	blood
47	chr11:9804800-9811800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:9804800-9811800	Strong transcription	Fetal Intestine Small	intestine
49	chr11:9804800-9811800	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr11:9804800-9812000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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