Variant report

Variant	rs61876893
Chromosome Location	chr11:9839522-9839523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9837195..9840045-chr11:9851275..9853158,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10500709	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11042505	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11601940	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11603291	0.83[AMR][1000 genomes]
rs12416694	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55693083	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61876894	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9812200-9862200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:9818600-9881400	Weak transcription	Spleen	Spleen
3	chr11:9824200-9867600	Weak transcription	Psoas Muscle	Psoas
4	chr11:9824400-9841400	Weak transcription	Fetal Heart	heart
5	chr11:9825800-9841600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:9826800-9868200	Weak transcription	Aorta	Aorta
7	chr11:9829600-9841200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:9829600-9841800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:9829600-9853000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:9829600-9853000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:9829600-9865600	Weak transcription	Gastric	stomach
12	chr11:9829800-9841800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:9829800-9846800	Weak transcription	HUVEC	blood vessel
14	chr11:9829800-9853000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:9830000-9841800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:9830000-9860000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:9830000-9860800	Weak transcription	Primary T cells from cord blood	blood
18	chr11:9830000-9864400	Weak transcription	Esophagus	oesophagus
19	chr11:9830200-9841600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:9830200-9853200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:9830200-9863000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr11:9830400-9842600	Weak transcription	HepG2	liver
23	chr11:9830400-9852800	Weak transcription	Lung	lung
24	chr11:9830400-9860400	Weak transcription	Primary B cells from cord blood	blood
25	chr11:9830400-9860400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:9830400-9860400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:9830400-9860400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr11:9830400-9860800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:9830400-9880400	Weak transcription	Thymus	Thymus
30	chr11:9830600-9860400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:9830800-9841800	Weak transcription	Pancreas	Pancrea
32	chr11:9830800-9860600	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:9830800-9865600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:9830800-9866800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:9830800-9880600	Weak transcription	Fetal Brain Male	brain
36	chr11:9833200-9852800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:9833400-9849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:9833400-9868400	Weak transcription	Fetal Kidney	kidney
39	chr11:9833600-9849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:9833600-9852800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:9833600-9878800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:9833800-9847600	Weak transcription	Fetal Intestine Small	intestine
43	chr11:9834200-9852800	Weak transcription	Dnd41	blood
44	chr11:9834200-9876600	Weak transcription	Brain Germinal Matrix	brain
45	chr11:9834400-9842600	Weak transcription	Fetal Intestine Large	intestine
46	chr11:9834400-9848200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:9834400-9851400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:9834400-9852800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:9834400-9860600	Weak transcription	Brain Anterior Caudate	brain
50	chr11:9834600-9852600	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links