Variant report

Variant	rs61877007
Chromosome Location	chr11:9996241-9996242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9994842..9997807-chr11:10313418..10316499,3	MCF-7	breast:
2	chr11:9994901..9996412-chr11:10324131..10325757,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254554	Chromatin interaction
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10500715	0.89[EUR][1000 genomes]
rs11042556	0.82[EUR][1000 genomes]
rs4910084	0.82[EUR][1000 genomes]
rs4910087	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106914	0.88[EUR][1000 genomes]
rs7933475	0.90[EUR][1000 genomes]
rs7951950	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
2	chr11:9974200-9999000	Weak transcription	Fetal Heart	heart
3	chr11:9974200-9999000	Weak transcription	HSMMtube	muscle
4	chr11:9979800-9999200	Weak transcription	NH-A	brain
5	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:9981200-10004200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:9981200-10009200	Weak transcription	Brain Germinal Matrix	brain
8	chr11:9981400-9999000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:9981400-10002200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:9981400-10003400	Weak transcription	Brain Anterior Caudate	brain
11	chr11:9981400-10003400	Weak transcription	NHEK	skin
12	chr11:9981400-10003600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:9981400-10004200	Weak transcription	Esophagus	oesophagus
14	chr11:9981400-10004200	Weak transcription	Lung	lung
15	chr11:9981400-10004400	Weak transcription	HepG2	liver
16	chr11:9981400-10008800	Weak transcription	Primary T cells from cord blood	blood
17	chr11:9981400-10010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:9981400-10014800	Weak transcription	Dnd41	blood
19	chr11:9981400-10017000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
21	chr11:9981600-10003400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:9981800-10003400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:9981800-10004800	Weak transcription	Ovary	ovary
24	chr11:9983600-10004800	Weak transcription	Fetal Lung	lung
25	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:9983800-9997200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:9984600-10010200	Weak transcription	Fetal Kidney	kidney
28	chr11:9984800-9999200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:9985000-9998000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:9985800-9997600	Weak transcription	Fetal Intestine Small	intestine
31	chr11:9985800-9998800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:9985800-10000600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:9985800-10004000	Weak transcription	Placenta	Placenta
34	chr11:9985800-10004200	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:9985800-10004400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:9985800-10021600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
38	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
39	chr11:9986000-10006000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:9987200-10003600	Weak transcription	Hela-S3	cervix
41	chr11:9987600-10002600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:9989400-10004000	Weak transcription	Fetal Stomach	stomach
43	chr11:9990000-10002600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:9990000-10004800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:9990000-10012600	Weak transcription	Liver	Liver
46	chr11:9990000-10018200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr11:9990200-9998800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:9990200-10006200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:9990400-9998000	Weak transcription	Fetal Intestine Large	intestine
50	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links