Variant report

Variant	rs61878636
Chromosome Location	chr11:10146469-10146470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10743129	0.81[EUR][1000 genomes]
rs10770103	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840337	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840338	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840344	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840359	0.90[EUR][1000 genomes]
rs10840375	0.85[EUR][1000 genomes]
rs11042571	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042578	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042579	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042580	0.81[EUR][1000 genomes]
rs11042593	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042595	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042601	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042609	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042615	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11042618	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042623	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042627	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042632	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11042641	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11042683	0.81[EUR][1000 genomes]
rs11042731	1.00[ASN][1000 genomes]
rs11600251	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11600489	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11603440	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606561	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11607682	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607703	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360783	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12362938	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364676	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416695	1.00[ASN][1000 genomes]
rs12417184	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12418212	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418514	1.00[ASN][1000 genomes]
rs12418619	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419923	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420122	0.83[EUR][1000 genomes]
rs12420734	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12420950	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421096	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12421179	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421200	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421931	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372807	0.91[EUR][1000 genomes]
rs1372808	0.83[EUR][1000 genomes]
rs1442737	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17271847	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17356792	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359113	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1822291	0.84[EUR][1000 genomes]
rs1822292	0.80[EUR][1000 genomes]
rs1867135	0.85[EUR][1000 genomes]
rs2197171	0.83[EUR][1000 genomes]
rs2403292	0.89[EUR][1000 genomes]
rs28731164	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34683105	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4271380	0.83[EUR][1000 genomes]
rs4281477	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4345958	1.00[ASN][1000 genomes]
rs4385889	0.84[EUR][1000 genomes]
rs4450168	1.00[ASN][1000 genomes]
rs4478985	0.90[EUR][1000 genomes]
rs4519084	0.84[EUR][1000 genomes]
rs4529876	0.91[EUR][1000 genomes]
rs4643073	0.81[EUR][1000 genomes]
rs4910095	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4910098	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788918	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55796222	0.83[EUR][1000 genomes]
rs56853694	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61877048	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877049	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878582	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878587	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878622	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889838	1.00[ASN][1000 genomes]
rs61891765	1.00[ASN][1000 genomes]
rs7104093	1.00[ASN][1000 genomes]
rs7114303	0.90[EUR][1000 genomes]
rs7123453	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7123820	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131445	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924875	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7928959	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931804	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935774	0.84[EUR][1000 genomes]
rs7935934	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7938491	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7938502	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938647	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938788	0.91[EUR][1000 genomes]
rs7945980	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7946995	0.89[EUR][1000 genomes]
rs7947306	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7948215	0.86[EUR][1000 genomes]
rs7950447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2543425	chr11:10145328-10146790	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10140000-10156200	Weak transcription	Fetal Lung	lung
5	chr11:10144200-10160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:10144400-10152600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:10144600-10156400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:10144800-10147000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:10144800-10147000	Weak transcription	Osteobl	bone
10	chr11:10144800-10147200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:10144800-10147200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:10144800-10147800	Weak transcription	NHLF	lung
13	chr11:10144800-10148000	Weak transcription	Adipose Nuclei	Adipose
14	chr11:10144800-10152600	Weak transcription	Ovary	ovary
15	chr11:10144800-10154800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:10144800-10155200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:10144800-10161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:10144800-10161400	Weak transcription	HSMM	muscle
19	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
20	chr11:10145000-10147000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:10145000-10147200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:10145000-10148200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:10145400-10146800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:10145400-10160800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:10145400-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:10145600-10147200	Weak transcription	NHDF-Ad	bronchial
27	chr11:10145800-10156400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:10146000-10147200	Weak transcription	HMEC	breast
29	chr11:10146200-10147400	Weak transcription	NHEK	skin

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