Variant report

Variant	rs61878637
Chromosome Location	chr11:10154062-10154063
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61878659	0.81[EUR][1000 genomes]
rs7108546	0.82[EUR][1000 genomes]
rs7120043	0.84[EUR][1000 genomes]
rs7122370	0.84[EUR][1000 genomes]
rs7123467	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10140000-10156200	Weak transcription	Fetal Lung	lung
5	chr11:10144200-10160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:10144600-10156400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:10144800-10154800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:10144800-10155200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:10144800-10161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:10144800-10161400	Weak transcription	HSMM	muscle
11	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
12	chr11:10145400-10160800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:10145400-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:10145800-10156400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:10147800-10160800	Weak transcription	NHEK	skin
16	chr11:10148000-10161000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:10148200-10160800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:10148400-10160800	Weak transcription	Adipose Nuclei	Adipose
19	chr11:10148400-10161400	Weak transcription	NHLF	lung
20	chr11:10148600-10160800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:10148800-10160800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:10149200-10154200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:10149200-10162800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr11:10151800-10156400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:10152600-10155600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:10152600-10156200	Weak transcription	Right Ventricle	heart
27	chr11:10152800-10156600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:10152800-10161400	Weak transcription	Ovary	ovary
29	chr11:10153000-10156200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:10153800-10156200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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