Variant report

Variant	rs61879695
Chromosome Location	chr11:17116806-17116807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11024180	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11600230	1.00[ASN][1000 genomes]
rs11603765	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605718	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826970	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12419179	1.00[ASN][1000 genomes]
rs1471980	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924899	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933823	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933827	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933873	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967077	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974527	1.00[ASN][1000 genomes]
rs2040859	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28845191	1.00[ASN][1000 genomes]
rs35493302	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57726107	1.00[ASN][1000 genomes]
rs59545597	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60698184	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879689	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61879701	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100400-17119200	Weak transcription	Esophagus	oesophagus
2	chr11:17100400-17119200	Weak transcription	Pancreas	Pancrea
3	chr11:17100400-17119800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
5	chr11:17100600-17124200	Weak transcription	Fetal Brain Male	brain
6	chr11:17100800-17119600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:17101600-17145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:17108200-17141400	Strong transcription	Liver	Liver
13	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:17108400-17117000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:17108800-17126800	Strong transcription	Osteobl	bone
17	chr11:17109000-17117000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:17109000-17117000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:17109000-17121600	Strong transcription	Adipose Nuclei	Adipose
20	chr11:17109000-17121800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:17109200-17144600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:17109400-17128600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:17109400-17132600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:17109400-17148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:17109600-17127600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:17109600-17147000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:17109800-17117000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:17109800-17121600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:17110000-17118000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:17110000-17121600	Strong transcription	Fetal Muscle Leg	muscle
32	chr11:17110000-17122200	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr11:17110000-17128200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:17110000-17128400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:17110200-17117000	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr11:17110200-17117400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:17110200-17118200	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:17110200-17132800	Strong transcription	Fetal Intestine Large	intestine
39	chr11:17110200-17136400	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr11:17110600-17119000	Strong transcription	Placenta Amnion	Placenta Amnion
41	chr11:17111000-17117800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:17111000-17125400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:17111200-17118200	Strong transcription	Fetal Stomach	stomach
44	chr11:17111400-17119800	Weak transcription	Stomach Mucosa	stomach
45	chr11:17111600-17119800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr11:17111600-17119800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:17111600-17124400	Strong transcription	Fetal Intestine Small	intestine
48	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr11:17111800-17157800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:17112400-17118000	Strong transcription	Left Ventricle	heart

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