Variant report

Variant	rs61879701
Chromosome Location	chr11:17129826-17129827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17097491..17099357-chr11:17127400..17130821,3	MCF-7	breast:
2	chr11:17098505..17101274-chr11:17129763..17132323,2	K562	blood:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11024180	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11600230	1.00[ASN][1000 genomes]
rs11603765	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605718	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826970	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12419179	1.00[ASN][1000 genomes]
rs1471980	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924899	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933823	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933827	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933873	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967077	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974527	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040859	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28845191	1.00[ASN][1000 genomes]
rs35493302	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57726107	1.00[ASN][1000 genomes]
rs59545597	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60698184	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879689	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61879695	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7478986	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
2	chr11:17101600-17145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:17108200-17141400	Strong transcription	Liver	Liver
8	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:17109200-17144600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:17109400-17132600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:17109400-17148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:17109600-17147000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:17110200-17132800	Strong transcription	Fetal Intestine Large	intestine
16	chr11:17110200-17136400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:17111800-17157800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:17113600-17130000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:17115800-17154400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:17116800-17134800	Weak transcription	NHLF	lung
22	chr11:17116800-17149800	Weak transcription	A549	lung
23	chr11:17117800-17147000	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:17117800-17151800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:17118200-17135600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:17118200-17139400	Strong transcription	Placenta	Placenta
27	chr11:17118200-17141400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:17118400-17139200	Strong transcription	Primary B cells from peripheral blood	blood
29	chr11:17118400-17146800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:17119200-17130200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:17119400-17134800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:17120400-17130200	Weak transcription	Brain Germinal Matrix	brain
33	chr11:17120400-17131200	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:17120400-17157800	Weak transcription	Stomach Mucosa	stomach
35	chr11:17120400-17181600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr11:17120600-17130000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:17120600-17155800	Weak transcription	Esophagus	oesophagus
38	chr11:17120800-17156200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:17120800-17166200	Weak transcription	Pancreas	Pancrea
40	chr11:17120800-17171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:17120800-17172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:17121000-17130000	Weak transcription	NH-A	brain
43	chr11:17121000-17178000	Weak transcription	Psoas Muscle	Psoas
44	chr11:17121600-17130400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:17122200-17141600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr11:17122600-17145000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:17123000-17140000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:17123400-17132200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:17123400-17132400	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr11:17123600-17132200	Strong transcription	Left Ventricle	heart

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