Variant report

Variant	rs61879730
Chromosome Location	chr11:17202880-17202881
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17201544..17204843-chr11:17207859..17210741,3	K562	blood:
2	chr11:17202421..17202921-chr13:22177633..22178504,2	NB4	blood:
3	chr11:17196415..17198675-chr11:17200267..17202983,2	K562	blood:
4	chr11:17200195..17203044-chr11:17207705..17210741,3	K562	blood:

Variant related genes	Relation type
ENSG00000165487	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11607550	1.00[ASN][1000 genomes]
rs61879720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61879757	1.00[ASN][1000 genomes]
rs61881887	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv553569	chr11:17201219-17211182	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
2	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
3	chr11:17158000-17215600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:17165200-17215200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:17167400-17204400	Weak transcription	Thymus	Thymus
6	chr11:17167400-17212600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:17167400-17228000	Weak transcription	Fetal Thymus	thymus
8	chr11:17172600-17214600	Weak transcription	Fetal Brain Female	brain
9	chr11:17184800-17228800	Weak transcription	Esophagus	oesophagus
10	chr11:17185800-17207400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:17185800-17212800	Weak transcription	Pancreas	Pancrea
12	chr11:17187000-17212600	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:17187000-17228000	Weak transcription	Colonic Mucosa	Colon
14	chr11:17187200-17207200	Weak transcription	K562	blood
15	chr11:17187200-17210000	Weak transcription	Psoas Muscle	Psoas
16	chr11:17187200-17210000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:17187200-17212600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:17187200-17214000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:17187200-17214200	Weak transcription	Right Ventricle	heart
20	chr11:17187200-17226800	Weak transcription	Small Intestine	intestine
21	chr11:17189400-17203200	Weak transcription	Fetal Stomach	stomach
22	chr11:17191000-17203800	Weak transcription	Liver	Liver
23	chr11:17191000-17204000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:17191000-17207600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:17191000-17210000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:17191000-17210200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:17191000-17220600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:17191200-17204200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:17191200-17204400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:17191200-17204800	Weak transcription	Primary T cells from cord blood	blood
31	chr11:17191200-17208600	Weak transcription	GM12878-XiMat	blood
32	chr11:17191200-17209800	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:17191200-17210000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:17191200-17210000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr11:17191200-17212200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:17191200-17212400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr11:17191200-17212600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:17191200-17213000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:17191200-17213000	Weak transcription	Dnd41	blood
40	chr11:17191200-17227800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:17191400-17206600	Weak transcription	Primary B cells from cord blood	blood
42	chr11:17191400-17212800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr11:17191400-17213000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:17191400-17214400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:17191600-17203200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:17191600-17203800	Weak transcription	Fetal Lung	lung
47	chr11:17191600-17212200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:17191800-17212400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr11:17191800-17212800	Weak transcription	Fetal Kidney	kidney
50	chr11:17192000-17214400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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