Variant report

Variant	rs61881312
Chromosome Location	chr11:17049562-17049563
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11024132	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11600230	0.83[AMR][1000 genomes]
rs11603461	1.00[ASN][1000 genomes]
rs11604470	1.00[ASN][1000 genomes]
rs11604561	1.00[ASN][1000 genomes]
rs11605779	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827341	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417522	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418260	1.00[ASN][1000 genomes]
rs12419179	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1544609	1.00[ASN][1000 genomes]
rs28845191	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35297605	1.00[ASN][1000 genomes]
rs55763300	1.00[ASN][1000 genomes]
rs55928651	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56254605	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57726107	0.82[AMR][1000 genomes]
rs59007596	0.86[ASN][1000 genomes]
rs59075718	1.00[ASN][1000 genomes]
rs61762011	1.00[ASN][1000 genomes]
rs61879669	1.00[ASN][1000 genomes]
rs61879670	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879673	1.00[ASN][1000 genomes]
rs61879686	1.00[ASN][1000 genomes]
rs61879698	1.00[ASN][1000 genomes]
rs61879699	1.00[ASN][1000 genomes]
rs61879703	1.00[ASN][1000 genomes]
rs61879714	1.00[ASN][1000 genomes]
rs61879715	1.00[ASN][1000 genomes]
rs61879721	1.00[ASN][1000 genomes]
rs61879731	1.00[ASN][1000 genomes]
rs72869096	1.00[ASN][1000 genomes]
rs72870837	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72870840	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481457	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17037000-17050200	Weak transcription	Adipose Nuclei	Adipose
2	chr11:17037200-17050400	Weak transcription	Brain Anterior Caudate	brain
3	chr11:17037200-17056000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:17037600-17058400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:17037600-17058600	Weak transcription	Gastric	stomach
6	chr11:17037800-17057400	Weak transcription	Fetal Stomach	stomach
7	chr11:17037800-17057800	Weak transcription	Pancreas	Pancrea
8	chr11:17039600-17049600	Weak transcription	Thymus	Thymus
9	chr11:17041200-17051800	Weak transcription	Fetal Intestine Large	intestine
10	chr11:17045200-17050000	Strong transcription	Fetal Intestine Small	intestine
11	chr11:17046000-17056000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:17046200-17049800	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:17046800-17057400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:17048600-17062000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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