Variant report

Variant	rs61882037
Chromosome Location	chr11:16914910-16914911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16914855..16917197-chr11:16922400..16924904,3	MCF-7	breast:
2	chr11:16901136..16902901-chr11:16914387..16916198,2	K562	blood:
3	chr11:16912383..16915251-chr11:16918244..16921230,3	K562	blood:
4	chr11:16914888..16916923-chr11:16925227..16926853,2	MCF-7	breast:
5	chr11:16912383..16915657-chr11:16918244..16920114,3	K562	blood:
6	chr11:16913445..16915205-chr11:17097801..17099335,3	MCF-7	breast:
7	chr11:16883507..16885093-chr11:16913908..16916539,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11024074	0.80[ASN][1000 genomes]
rs12418111	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1638456	0.86[ASN][1000 genomes]
rs1638457	0.88[ASN][1000 genomes]
rs16933675	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16933680	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16933682	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs177544	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs177546	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs177551	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs177554	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2190752	0.87[AFR][1000 genomes]
rs35005405	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35109048	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs378863	0.88[ASN][1000 genomes]
rs381815	0.90[ASN][1000 genomes]
rs388968	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs391332	0.85[ASN][1000 genomes]
rs393633	0.88[ASN][1000 genomes]
rs397373	0.86[ASN][1000 genomes]
rs407354	0.88[ASN][1000 genomes]
rs413858	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs414219	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs414992	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs416258	0.82[ASN][1000 genomes]
rs422272	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs425325	0.88[ASN][1000 genomes]
rs426570	0.80[ASN][1000 genomes]
rs427429	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs428840	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs432046	0.88[ASN][1000 genomes]
rs434899	0.88[ASN][1000 genomes]
rs435206	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs438751	0.81[ASN][1000 genomes]
rs445205	0.88[ASN][1000 genomes]
rs445431	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs446518	0.88[ASN][1000 genomes]
rs448671	0.90[ASN][1000 genomes]
rs4756875	0.87[AFR][1000 genomes]
rs4756876	0.87[AFR][1000 genomes]
rs4757445	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4757449	0.87[AFR][1000 genomes]
rs58542530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59828007	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61882035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882038	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs758402	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7926335	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16910000-16917800	Weak transcription	Lung	lung
2	chr11:16911200-16916000	Enhancers	Stomach Mucosa	stomach
3	chr11:16912200-16923600	Weak transcription	A549	lung
4	chr11:16912400-16919400	Weak transcription	Liver	Liver
5	chr11:16912600-16915600	Enhancers	NHDF-Ad	bronchial
6	chr11:16912600-16915800	Enhancers	HMEC	breast
7	chr11:16912600-16916000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:16912600-16916000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:16912800-16915600	Enhancers	Osteobl	bone
10	chr11:16913000-16918400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:16913400-16916800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:16913600-16915000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:16913600-16915200	Weak transcription	Spleen	Spleen
14	chr11:16913600-16916000	Enhancers	Pancreas	Pancrea
15	chr11:16913600-16916200	Enhancers	Left Ventricle	heart
16	chr11:16913800-16915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:16913800-16915000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:16913800-16915000	Weak transcription	Adipose Nuclei	Adipose
19	chr11:16913800-16915000	Weak transcription	Esophagus	oesophagus
20	chr11:16913800-16916400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:16913800-16921800	Enhancers	Fetal Heart	heart
22	chr11:16914000-16915000	Weak transcription	Placenta	Placenta
23	chr11:16914000-16915200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:16914000-16917000	Weak transcription	HSMM	muscle
25	chr11:16914000-16927400	Weak transcription	HSMMtube	muscle
26	chr11:16914200-16916000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:16914400-16915200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:16914400-16915600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:16914400-16916000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:16914400-16916200	Enhancers	Gastric	stomach
31	chr11:16914400-16919200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:16914600-16915000	Weak transcription	Right Atrium	heart
33	chr11:16914600-16915600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr11:16914600-16916000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr11:16914600-16921200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:16914800-16915200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:16914800-16915600	Enhancers	Fetal Intestine Small	intestine
38	chr11:16914800-16915800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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