Variant report

Variant	rs61882461
Chromosome Location	chr11:18017127-18017128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17720417	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17720513	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17721184	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17721739	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17794213	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17794760	0.82[EUR][1000 genomes]
rs211126	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs211127	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs211134	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs211138	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2237912	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237921	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2237924	0.85[AMR][1000 genomes]
rs2283236	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2283239	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34614478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs394218	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3993323	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3993324	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs440234	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4438010	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4756927	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4757604	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4757605	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4757606	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61882454	0.85[AMR][1000 genomes]
rs61882456	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61882460	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882465	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61884488	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61884489	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61884492	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884493	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884494	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72874057	0.80[EUR][1000 genomes]
rs72874061	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs758437	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832079	chr11:17927967-18047743	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17934400-18033600	Weak transcription	Small Intestine	intestine
2	chr11:17944000-18026600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:17945400-18033400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:17971200-18026000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:17975000-18020200	Weak transcription	A549	lung
6	chr11:17980400-18033600	Weak transcription	Colonic Mucosa	Colon
7	chr11:17981200-18033200	Weak transcription	Esophagus	oesophagus
8	chr11:17989400-18023400	Weak transcription	Gastric	stomach
9	chr11:17989400-18033400	Weak transcription	Pancreas	Pancrea
10	chr11:17991000-18027000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:17994000-18033400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:17996600-18032400	Weak transcription	Fetal Brain Male	brain
13	chr11:17998400-18033200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:18002400-18033800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:18006800-18021000	Weak transcription	Placenta	Placenta
16	chr11:18007000-18017800	Strong transcription	Dnd41	blood
17	chr11:18007000-18029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:18007800-18021000	Weak transcription	Psoas Muscle	Psoas
19	chr11:18008200-18025800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:18008200-18033200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:18008400-18023800	Weak transcription	Fetal Lung	lung
22	chr11:18008400-18026800	Weak transcription	NH-A	brain
23	chr11:18008600-18022600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:18008600-18033600	Weak transcription	NHDF-Ad	bronchial
25	chr11:18008800-18020800	Weak transcription	Fetal Kidney	kidney
26	chr11:18008800-18025800	Weak transcription	NHEK	skin
27	chr11:18008800-18033400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:18008800-18033400	Weak transcription	HUVEC	blood vessel
29	chr11:18009000-18020400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:18009200-18020400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:18009200-18021600	Weak transcription	Fetal Intestine Small	intestine
32	chr11:18009200-18026200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr11:18009200-18026800	Weak transcription	K562	blood
34	chr11:18009400-18020600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:18009400-18033600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:18009600-18020600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:18009600-18021200	Weak transcription	Osteobl	bone
38	chr11:18010200-18018800	Weak transcription	HSMM	muscle
39	chr11:18010200-18020600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:18010200-18022800	Weak transcription	Thymus	Thymus
41	chr11:18010200-18033600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:18010400-18017400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:18010400-18020600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr11:18010400-18020600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:18010400-18021000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr11:18010400-18022800	Weak transcription	Right Ventricle	heart
47	chr11:18010400-18033600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:18010600-18020600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:18010600-18026000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:18012600-18017600	Weak transcription	Primary hematopoietic stem cells	blood

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