Variant report

Variant	rs61882522
Chromosome Location	chr11:18109343-18109344
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18095890..18098789-chr11:18109246..18111081,2	K562	blood:
2	chr11:18101916..18104550-chr11:18109024..18114636,6	K562	blood:

Variant related genes	Relation type
ENSG00000166788	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17474534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882497	0.92[EUR][1000 genomes]
rs61882499	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882531	1.00[ASN][1000 genomes]
rs61882532	1.00[ASN][1000 genomes]
rs67369585	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120998	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875726	0.92[EUR][1000 genomes]
rs951624	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18085200-18113000	Weak transcription	Fetal Brain Male	brain
2	chr11:18085800-18109600	Weak transcription	Spleen	Spleen
3	chr11:18087400-18109800	Weak transcription	Gastric	stomach
4	chr11:18087400-18115800	Weak transcription	Pancreas	Pancrea
5	chr11:18092800-18109400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:18096400-18118000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:18098200-18124400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:18099000-18125800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:18099200-18114200	Weak transcription	Fetal Heart	heart
10	chr11:18099600-18114800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:18099800-18118400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:18099800-18124800	Strong transcription	Dnd41	blood
13	chr11:18100200-18126200	Weak transcription	Small Intestine	intestine
14	chr11:18100400-18110400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr11:18100400-18118600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:18100400-18126000	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:18100600-18109800	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:18100600-18117600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:18100600-18118200	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:18100600-18125600	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:18100800-18126000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:18101000-18112200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:18101000-18122000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:18101600-18114400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:18102200-18117800	Strong transcription	HSMM	muscle
26	chr11:18102400-18118400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr11:18103000-18114000	Weak transcription	HSMMtube	muscle
28	chr11:18103200-18114600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:18103400-18109600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:18103400-18110400	Weak transcription	Fetal Brain Female	brain
31	chr11:18103400-18112600	Weak transcription	Psoas Muscle	Psoas
32	chr11:18103400-18126200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr11:18103600-18109600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:18103600-18110200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:18103800-18109600	Weak transcription	K562	blood
36	chr11:18104600-18111600	Strong transcription	Liver	Liver
37	chr11:18104800-18111600	Strong transcription	Placenta	Placenta
38	chr11:18104800-18125200	Strong transcription	Primary T cells from cord blood	blood
39	chr11:18104800-18125200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:18105000-18110200	Strong transcription	Ovary	ovary
41	chr11:18105000-18112200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:18105000-18118200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:18105000-18118400	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:18105200-18118200	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:18105200-18118400	Strong transcription	Primary B cells from peripheral blood	blood
46	chr11:18105200-18118600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:18105400-18112800	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:18105400-18119000	Strong transcription	HMEC	breast
49	chr11:18105400-18125800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:18105600-18111000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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