Variant report

Variant	rs61882524
Chromosome Location	chr11:18115620-18115621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:18115361-18115878	MCF-7	breast:	n/a	n/a
2	TAL1	chr11:18115620-18115820	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:18113148..18115855-chr11:18125984..18127640,2	MCF-7	breast:
2	chr11:18105565..18107407-chr11:18114398..18116399,2	K562	blood:
3	chr11:18114312..18117170-chr11:18118246..18120137,2	K562	blood:
4	chr11:18107232..18110048-chr11:18114396..18116772,2	MCF-7	breast:

Variant related genes	Relation type
SAAL1	TF binding region
ENSG00000166788	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17474534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882497	0.92[EUR][1000 genomes]
rs61882499	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882531	1.00[ASN][1000 genomes]
rs61882532	1.00[ASN][1000 genomes]
rs67369585	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120998	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875726	0.92[EUR][1000 genomes]
rs951624	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18087400-18115800	Weak transcription	Pancreas	Pancrea
2	chr11:18096400-18118000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:18098200-18124400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:18099000-18125800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:18099800-18118400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:18099800-18124800	Strong transcription	Dnd41	blood
7	chr11:18100200-18126200	Weak transcription	Small Intestine	intestine
8	chr11:18100400-18118600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:18100400-18126000	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:18100600-18117600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:18100600-18118200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:18100600-18125600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:18100800-18126000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:18101000-18122000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:18102200-18117800	Strong transcription	HSMM	muscle
16	chr11:18102400-18118400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:18103400-18126200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:18104800-18125200	Strong transcription	Primary T cells from cord blood	blood
19	chr11:18104800-18125200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:18105000-18118200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:18105000-18118400	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:18105200-18118200	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr11:18105200-18118400	Strong transcription	Primary B cells from peripheral blood	blood
24	chr11:18105200-18118600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:18105400-18119000	Strong transcription	HMEC	breast
26	chr11:18105400-18125800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:18105800-18118600	Strong transcription	Fetal Thymus	thymus
28	chr11:18106000-18117800	Strong transcription	Adipose Nuclei	Adipose
29	chr11:18107200-18126000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:18107400-18116200	Strong transcription	Fetal Lung	lung
31	chr11:18107400-18118200	Strong transcription	Fetal Muscle Trunk	muscle
32	chr11:18107400-18118400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:18107400-18121600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:18107400-18125800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:18107600-18118200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:18107600-18118400	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr11:18107600-18118600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:18107600-18125400	Strong transcription	Fetal Muscle Leg	muscle
39	chr11:18107800-18126200	Weak transcription	NHDF-Ad	bronchial
40	chr11:18108200-18125200	Strong transcription	Primary B cells from cord blood	blood
41	chr11:18108400-18117600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:18108600-18117800	Strong transcription	Primary hematopoietic stem cells	blood
43	chr11:18108600-18122800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:18109400-18117800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:18109400-18118200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:18110200-18115800	Weak transcription	Gastric	stomach
47	chr11:18110600-18119200	Strong transcription	Hela-S3	cervix
48	chr11:18110600-18126200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:18110800-18115800	Weak transcription	Brain Substantia Nigra	brain
50	chr11:18111000-18123600	Weak transcription	Aorta	Aorta

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