Variant report

Variant	rs61882691
Chromosome Location	chr11:46438715-46438716
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10160701	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10838602	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038897	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038900	0.94[EUR][1000 genomes]
rs11038906	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038914	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038919	0.94[EUR][1000 genomes]
rs11038927	0.94[EUR][1000 genomes]
rs11819869	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12272795	0.90[EUR][1000 genomes]
rs12283172	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12292425	0.92[EUR][1000 genomes]
rs12295266	0.93[EUR][1000 genomes]
rs12573978	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574250	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12574668	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575519	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12576115	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12576317	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12576359	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12577142	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12578042	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1472001	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1489192	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16938506	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17197116	0.84[AFR][1000 genomes]
rs2046768	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2067482	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171667	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2171668	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2279465	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2291487	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2864072	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2864076	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2902858	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34406563	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35324223	0.83[EUR][1000 genomes]
rs35623865	0.91[EUR][1000 genomes]
rs3740974	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3740977	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3802888	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3809047	0.81[ASN][1000 genomes]
rs4307676	0.87[EUR][1000 genomes]
rs55657382	0.91[EUR][1000 genomes]
rs55661562	0.91[EUR][1000 genomes]
rs55896955	0.80[EUR][1000 genomes]
rs57535407	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58147945	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59319338	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60722866	0.88[EUR][1000 genomes]
rs60932698	0.89[EUR][1000 genomes]
rs61882674	0.82[EUR][1000 genomes]
rs61882678	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61882682	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61882683	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61882701	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882702	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61882706	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882709	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882710	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882711	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882712	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882720	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882743	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882746	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882748	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882750	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882756	0.91[EUR][1000 genomes]
rs61882757	0.93[EUR][1000 genomes]
rs61882758	0.93[EUR][1000 genomes]
rs61884262	0.85[EUR][1000 genomes]
rs61884264	0.91[EUR][1000 genomes]
rs61884271	0.89[EUR][1000 genomes]
rs61884273	0.87[EUR][1000 genomes]
rs61884274	0.87[EUR][1000 genomes]
rs61884292	0.80[EUR][1000 genomes]
rs6485682	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6485685	0.91[EUR][1000 genomes]
rs7108770	0.89[EUR][1000 genomes]
rs7109698	0.81[EUR][1000 genomes]
rs7112229	0.96[EUR][1000 genomes]
rs7122039	0.92[EUR][1000 genomes]
rs7125907	0.92[EUR][1000 genomes]
rs7126316	0.86[EUR][1000 genomes]
rs7126343	0.87[EUR][1000 genomes]
rs7127529	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7128092	0.86[EUR][1000 genomes]
rs7130141	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73449983	0.93[EUR][1000 genomes]
rs7481312	0.94[EUR][1000 genomes]
rs7484002	0.91[EUR][1000 genomes]
rs7924401	0.92[EUR][1000 genomes]
rs7930103	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7932866	0.84[EUR][1000 genomes]
rs7936413	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7946705	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951579	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7951870	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs876701	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv309	chr11:46399678-46440503	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1050614	chr11:46414720-46496732	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46417000-46444400	Strong transcription	Fetal Stomach	stomach
2	chr11:46417200-46439600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:46417800-46463400	Weak transcription	Fetal Brain Male	brain
4	chr11:46421000-46444800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:46421000-46447000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:46423400-46439600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:46423400-46444600	Strong transcription	Stomach Smooth Muscle	stomach
8	chr11:46425400-46439600	Strong transcription	Liver	Liver
9	chr11:46426800-46468800	Weak transcription	Psoas Muscle	Psoas
10	chr11:46427000-46442800	Weak transcription	Right Atrium	heart
11	chr11:46427000-46444600	Strong transcription	Lung	lung
12	chr11:46428000-46443800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:46428800-46440600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:46429000-46439600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:46429000-46439600	Strong transcription	GM12878-XiMat	blood
16	chr11:46429200-46446400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:46430200-46450600	Weak transcription	HUVEC	blood vessel
18	chr11:46430200-46456000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:46430600-46438800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:46430600-46451600	Weak transcription	NHDF-Ad	bronchial
21	chr11:46430600-46455000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:46433000-46439800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:46433000-46443200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:46433200-46449200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr11:46433600-46439200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:46433600-46439400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:46433600-46439600	Strong transcription	Colonic Mucosa	Colon
28	chr11:46433600-46440800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr11:46433600-46444200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:46433600-46466400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:46433800-46439800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:46434000-46439600	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:46434000-46439600	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:46434200-46439200	Enhancers	Fetal Heart	heart
35	chr11:46434200-46439600	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr11:46434200-46439600	Strong transcription	Placenta	Placenta
37	chr11:46434200-46440000	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr11:46434200-46442000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:46434200-46444800	Strong transcription	Primary B cells from cord blood	blood
40	chr11:46434400-46439000	Strong transcription	Rectal Smooth Muscle	rectum
41	chr11:46434400-46439600	Strong transcription	Brain Substantia Nigra	brain
42	chr11:46434600-46439600	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr11:46434600-46439600	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:46434600-46439800	Strong transcription	Pancreas	Pancrea
45	chr11:46434600-46441200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:46434600-46444200	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:46434800-46439000	Strong transcription	Fetal Brain Female	brain
48	chr11:46434800-46439600	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr11:46435000-46446400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr11:46435200-46439600	Strong transcription	Colon Smooth Muscle	Colon

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