Variant report

Variant	rs61882710
Chromosome Location	chr11:46473942-46473943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46468131..46471544-chr11:46473469..46477776,3	K562	blood:
2	chr11:46473814..46475655-chr11:46477410..46480121,2	MCF-7	breast:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10160701	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838602	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038897	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038900	0.96[EUR][1000 genomes]
rs11038906	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038914	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038919	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038927	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11819869	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12272795	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12283172	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12292425	0.92[EUR][1000 genomes]
rs12295266	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12573978	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12574250	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574668	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12575519	0.96[EUR][1000 genomes]
rs12576115	0.95[EUR][1000 genomes]
rs12576317	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12576359	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12577142	0.95[EUR][1000 genomes]
rs12578042	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1472001	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489192	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16938506	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17197116	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2046768	0.98[EUR][1000 genomes]
rs2067482	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2171667	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171668	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279465	0.98[EUR][1000 genomes]
rs2291487	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2864072	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2864076	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2902858	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34406563	0.95[EUR][1000 genomes]
rs35324223	0.84[EUR][1000 genomes]
rs35623865	0.91[EUR][1000 genomes]
rs3740974	0.98[EUR][1000 genomes]
rs3740977	0.99[EUR][1000 genomes]
rs3802888	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4307676	0.87[EUR][1000 genomes]
rs55657382	0.91[EUR][1000 genomes]
rs55661562	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55750336	0.90[ASN][1000 genomes]
rs55896955	0.80[EUR][1000 genomes]
rs57535407	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58147945	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59319338	0.97[EUR][1000 genomes]
rs60722866	0.88[EUR][1000 genomes]
rs60932698	0.89[EUR][1000 genomes]
rs61882674	0.84[EUR][1000 genomes]
rs61882678	0.90[EUR][1000 genomes]
rs61882682	0.98[EUR][1000 genomes]
rs61882683	0.93[EUR][1000 genomes]
rs61882691	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882701	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882702	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61882706	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61882709	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882712	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882720	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882743	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882746	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882748	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882750	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882756	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882757	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882758	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61884262	0.85[EUR][1000 genomes]
rs61884264	0.91[EUR][1000 genomes]
rs61884271	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61884273	0.87[EUR][1000 genomes]
rs61884274	0.87[EUR][1000 genomes]
rs61884292	0.80[EUR][1000 genomes]
rs6485682	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6485685	0.91[EUR][1000 genomes]
rs7108770	0.89[EUR][1000 genomes]
rs7109698	0.81[EUR][1000 genomes]
rs7112229	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7122039	0.92[EUR][1000 genomes]
rs7125907	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7126316	0.86[EUR][1000 genomes]
rs7126343	0.87[EUR][1000 genomes]
rs7127529	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7128092	0.86[EUR][1000 genomes]
rs7130141	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73449983	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7481312	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7484002	0.91[EUR][1000 genomes]
rs756343	0.90[ASN][1000 genomes]
rs7924401	0.92[EUR][1000 genomes]
rs7930103	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932866	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7936413	0.98[EUR][1000 genomes]
rs7946705	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7951579	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951870	0.97[EUR][1000 genomes]
rs876701	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050614	chr11:46414720-46496732	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46455200-46488800	Weak transcription	Hela-S3	cervix
2	chr11:46455400-46492200	Weak transcription	A549	lung
3	chr11:46456600-46493600	Weak transcription	Colonic Mucosa	Colon
4	chr11:46456800-46494200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:46456800-46515000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:46458200-46477200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:46464200-46489200	Weak transcription	Thymus	Thymus
8	chr11:46464200-46489400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:46464200-46513000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:46464400-46489600	Weak transcription	Placenta	Placenta
11	chr11:46464800-46478600	Weak transcription	Spleen	Spleen
12	chr11:46464800-46479000	Weak transcription	NHEK	skin
13	chr11:46465000-46513400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:46465200-46474600	Weak transcription	Fetal Intestine Small	intestine
15	chr11:46465200-46475200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:46465200-46479200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:46465200-46479400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:46465200-46489200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:46465200-46489400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:46465200-46489400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:46465200-46489400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:46465200-46494600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:46465200-46504400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:46465400-46476600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:46465400-46483200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:46465400-46489400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:46465600-46476800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr11:46465600-46489400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:46465600-46511200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:46465800-46474400	Weak transcription	HepG2	liver
31	chr11:46465800-46476800	Weak transcription	Fetal Thymus	thymus
32	chr11:46465800-46478200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr11:46465800-46486800	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:46466000-46488800	Weak transcription	Dnd41	blood
35	chr11:46466200-46496200	Weak transcription	GM12878-XiMat	blood
36	chr11:46468000-46493600	Weak transcription	Right Ventricle	heart
37	chr11:46468400-46476800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:46468400-46477200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:46468400-46478000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr11:46468400-46482600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:46468400-46485400	Weak transcription	Right Atrium	heart
42	chr11:46468400-46489400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:46468400-46492200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:46468600-46476400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:46468600-46477200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:46468600-46477200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:46468600-46477400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:46468600-46489400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr11:46468600-46493800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:46468800-46485400	Weak transcription	Fetal Stomach	stomach

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