Variant report

Variant	rs61882769
Chromosome Location	chr11:35240329-35240330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:35239985-35241676	U87	brain:	n/a	n/a
2	POLR2A	chr11:35240062-35242272	U87	brain:	n/a	n/a
3	POLR2A	chr11:35240075-35241574	GM12892	blood:	n/a	n/a
4	POLR2A	chr11:35240224-35242130	GM12891	blood:	n/a	n/a
5	POLR2A	chr11:35240005-35242230	PANC-1	pancreas:	n/a	n/a
6	POLR2A	chr11:35235854-35244123	PANC-1	pancreas:	n/a	n/a
7	POLR2A	chr11:35240046-35242108	GM12892	blood:	n/a	n/a
8	POLR2A	chr11:35240306-35241068	GM12891	blood:	n/a	n/a
9	POLR2A	chr11:35240192-35242143	GM12892	blood:	n/a	n/a
10	POLR2A	chr11:35220356-35243977	U87	brain:	n/a	n/a
11	POLR2A	chr11:35237283-35244142	U87	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000255443	TF binding region
CD44	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11033029	1.00[ASN][1000 genomes]
rs17447734	1.00[ASN][1000 genomes]
rs4755391	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55715534	0.89[ASN][1000 genomes]
rs7105890	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724473	1.00[ASN][1000 genomes]
rs72916162	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35200600-35244800	Weak transcription	Fetal Brain Male	brain
2	chr11:35214200-35240800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:35214600-35250600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:35215600-35241200	Weak transcription	Small Intestine	intestine
5	chr11:35222600-35240600	Weak transcription	Spleen	Spleen
6	chr11:35224000-35241600	Weak transcription	Left Ventricle	heart
7	chr11:35226200-35244800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:35227800-35240400	Weak transcription	Colonic Mucosa	Colon
9	chr11:35231400-35240400	Weak transcription	Fetal Lung	lung
10	chr11:35231600-35243600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:35232200-35245400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:35232400-35245600	Genic enhancers	NHDF-Ad	bronchial
13	chr11:35232800-35240600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:35233200-35244400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:35233400-35259600	Weak transcription	Liver	Liver
16	chr11:35234200-35247400	Weak transcription	Fetal Intestine Small	intestine
17	chr11:35234600-35241600	Genic enhancers	NHLF	lung
18	chr11:35234800-35240400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr11:35235200-35249200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:35235800-35244200	Strong transcription	Fetal Muscle Leg	muscle
21	chr11:35236000-35243000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:35236000-35245200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:35236000-35247600	Strong transcription	Dnd41	blood
24	chr11:35236000-35248000	Strong transcription	Primary hematopoietic stem cells	blood
25	chr11:35236200-35242000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:35236200-35252200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:35236200-35254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:35236400-35240600	Genic enhancers	Muscle Satellite Cultured Cells	--
29	chr11:35236400-35241800	Strong transcription	A549	lung
30	chr11:35236400-35242000	Genic enhancers	Fetal Thymus	thymus
31	chr11:35236400-35253400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:35236400-35253400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr11:35236800-35248400	Strong transcription	Adipose Nuclei	Adipose
34	chr11:35236800-35253200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:35236800-35259600	Weak transcription	Psoas Muscle	Psoas
36	chr11:35237000-35240600	Weak transcription	Placenta	Placenta
37	chr11:35237000-35240600	Genic enhancers	NH-A	brain
38	chr11:35237000-35241000	Weak transcription	HSMMtube	muscle
39	chr11:35237000-35241200	Genic enhancers	Osteobl	bone
40	chr11:35237000-35241800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:35237000-35247000	Strong transcription	Hela-S3	cervix
42	chr11:35237000-35253000	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:35237000-35254600	Strong transcription	HSMM	muscle
44	chr11:35237000-35259600	Weak transcription	HUVEC	blood vessel
45	chr11:35237400-35240400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:35237400-35241600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:35237600-35240400	Enhancers	Thymus	Thymus
48	chr11:35237600-35243600	Strong transcription	Lung	lung
49	chr11:35237800-35240600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:35238200-35250600	Weak transcription	Stomach Mucosa	stomach

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