Variant report

Variant	rs61884285
Chromosome Location	chr11:18293125-18293126
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:18293077..18294965-chr11:18415997..18417880,2	K562	blood:
2	chr11:18290700..18293627-chr11:18295219..18297523,2	K562	blood:
3	chr11:18292653..18294965-chr11:18415997..18417880,3	K562	blood:
4	chr11:18280479..18282742-chr11:18290533..18293287,2	K562	blood:

Variant related genes	Relation type
ENSG00000134333	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11024591	0.83[EUR][1000 genomes]
rs11024595	0.81[EUR][1000 genomes]
rs11024600	0.86[ASN][1000 genomes]
rs12274683	0.86[ASN][1000 genomes]
rs12802663	0.85[ASN][1000 genomes]
rs1533723	0.85[ASN][1000 genomes]
rs1969358	0.86[ASN][1000 genomes]
rs2403253	0.83[ASN][1000 genomes]
rs4415733	0.82[ASN][1000 genomes]
rs59873620	0.83[EUR][1000 genomes]
rs61882734	0.83[EUR][1000 genomes]
rs61882736	0.83[EUR][1000 genomes]
rs61884287	0.99[ASN][1000 genomes]
rs7131332	0.86[ASN][1000 genomes]
rs73430815	0.99[ASN][1000 genomes]
rs874957	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18278400-18293200	Weak transcription	Aorta	Aorta
2	chr11:18283600-18301600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:18285200-18303200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:18285400-18300600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:18285600-18308400	Weak transcription	Gastric	stomach
6	chr11:18285800-18298800	Weak transcription	HSMMtube	muscle
7	chr11:18287400-18303000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:18287600-18298600	Weak transcription	Liver	Liver
9	chr11:18287600-18299200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:18287600-18303000	Weak transcription	Spleen	Spleen
11	chr11:18287600-18334000	Weak transcription	Right Atrium	heart
12	chr11:18287800-18293600	Weak transcription	Lung	lung
13	chr11:18287800-18297000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:18287800-18298800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:18287800-18300800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:18287800-18301000	Weak transcription	HSMM	muscle
17	chr11:18289600-18296600	Weak transcription	Fetal Stomach	stomach
18	chr11:18289600-18299200	Weak transcription	HMEC	breast
19	chr11:18289800-18296800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:18290000-18296800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:18290000-18298800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:18290000-18299000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:18290000-18300200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:18290000-18300200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:18290000-18300600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr11:18290000-18303200	Weak transcription	NHEK	skin
27	chr11:18290000-18303400	Weak transcription	Small Intestine	intestine
28	chr11:18290200-18299600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:18290200-18300000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:18290200-18300200	Weak transcription	Adipose Nuclei	Adipose
31	chr11:18290200-18300800	Weak transcription	Hela-S3	cervix
32	chr11:18290200-18301200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr11:18290800-18298000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:18291400-18293400	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:18291400-18303200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:18291600-18298600	Weak transcription	GM12878-XiMat	blood
37	chr11:18291600-18301000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:18291800-18293800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr11:18291800-18303200	Weak transcription	Brain Angular Gyrus	brain
40	chr11:18291800-18307800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:18291800-18314400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:18292000-18300600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:18292000-18303200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:18292000-18303600	Weak transcription	Brain Germinal Matrix	brain
45	chr11:18292000-18308400	Weak transcription	Right Ventricle	heart
46	chr11:18292000-18314800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr11:18292200-18296600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:18292400-18293200	Enhancers	HepG2	liver
49	chr11:18292400-18303200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:18292400-18303200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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