Variant report

Variant	rs61887142
Chromosome Location	chr11:55871847-55871848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:55871838-55872012	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
OR8H2	TF binding region

Extended variants
information (count: 177 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs12099295	0.91[EUR][1000 genomes]
rs17527401	0.91[EUR][1000 genomes]
rs17527710	0.89[EUR][1000 genomes]
rs17527788	0.91[EUR][1000 genomes]
rs17527850	0.91[EUR][1000 genomes]
rs17527864	0.91[EUR][1000 genomes]
rs17528782	0.94[EUR][1000 genomes]
rs17528803	0.94[EUR][1000 genomes]
rs17530318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17530360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17530416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17530423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17599457	0.91[EUR][1000 genomes]
rs17599471	0.91[EUR][1000 genomes]
rs17599899	0.91[EUR][1000 genomes]
rs17599913	0.91[EUR][1000 genomes]
rs17600692	0.94[EUR][1000 genomes]
rs17600784	0.94[EUR][1000 genomes]
rs17600820	0.94[EUR][1000 genomes]
rs17603011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1947923	0.94[EUR][1000 genomes]
rs2449138	0.94[EUR][1000 genomes]
rs2512932	0.94[EUR][1000 genomes]
rs28421520	1.00[EUR][1000 genomes]
rs28537497	1.00[EUR][1000 genomes]
rs28688517	1.00[EUR][1000 genomes]
rs5018553	0.91[EUR][1000 genomes]
rs55696205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55833459	0.91[EUR][1000 genomes]
rs56057397	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56149224	0.86[AMR][1000 genomes]
rs56176720	0.91[EUR][1000 genomes]
rs56178210	0.91[EUR][1000 genomes]
rs56208265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56301431	0.91[EUR][1000 genomes]
rs56370444	0.91[EUR][1000 genomes]
rs56393785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402650	0.89[EUR][1000 genomes]
rs61746167	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61887074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61887143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61888282	1.00[AFR][1000 genomes]
rs61888467	0.87[EUR][1000 genomes]
rs61888468	0.94[EUR][1000 genomes]
rs61888469	0.94[EUR][1000 genomes]
rs61888470	0.94[EUR][1000 genomes]
rs61888471	0.94[EUR][1000 genomes]
rs61888472	0.94[EUR][1000 genomes]
rs61888473	0.94[EUR][1000 genomes]
rs61888545	0.94[EUR][1000 genomes]
rs61888546	0.94[EUR][1000 genomes]
rs61889622	0.87[EUR][1000 genomes]
rs61889973	0.94[EUR][1000 genomes]
rs61889974	0.94[EUR][1000 genomes]
rs61889975	0.94[EUR][1000 genomes]
rs61891189	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61891190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61891197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891202	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61891210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895181	0.91[EUR][1000 genomes]
rs61895182	0.91[EUR][1000 genomes]
rs61895183	0.91[EUR][1000 genomes]
rs61895184	0.91[EUR][1000 genomes]
rs61895240	0.91[EUR][1000 genomes]
rs61895241	0.91[EUR][1000 genomes]
rs61895243	0.91[EUR][1000 genomes]
rs61895244	0.91[EUR][1000 genomes]
rs61895245	0.91[EUR][1000 genomes]
rs61895246	0.91[EUR][1000 genomes]
rs61895247	0.91[EUR][1000 genomes]
rs61895248	0.91[EUR][1000 genomes]
rs61895249	0.91[EUR][1000 genomes]
rs61895250	0.87[EUR][1000 genomes]
rs61895251	0.91[EUR][1000 genomes]
rs61895252	0.91[EUR][1000 genomes]
rs61895253	0.91[EUR][1000 genomes]
rs61895254	0.91[EUR][1000 genomes]
rs61895255	0.91[EUR][1000 genomes]
rs61895256	0.91[EUR][1000 genomes]
rs61895257	0.91[EUR][1000 genomes]
rs61895258	0.91[EUR][1000 genomes]
rs61895259	0.91[EUR][1000 genomes]
rs61896168	0.91[EUR][1000 genomes]
rs61896169	0.91[EUR][1000 genomes]
rs61896182	0.91[EUR][1000 genomes]
rs61896183	0.91[EUR][1000 genomes]
rs61896184	0.91[EUR][1000 genomes]
rs61896235	0.91[EUR][1000 genomes]
rs61896236	0.89[EUR][1000 genomes]
rs61896237	0.91[EUR][1000 genomes]
rs61896238	0.91[EUR][1000 genomes]
rs61896240	0.91[EUR][1000 genomes]
rs61896241	0.91[EUR][1000 genomes]
rs61896242	0.84[EUR][1000 genomes]
rs61896244	0.91[EUR][1000 genomes]
rs61896245	0.91[EUR][1000 genomes]
rs61896247	0.91[EUR][1000 genomes]
rs61896248	0.91[EUR][1000 genomes]
rs61896249	0.91[EUR][1000 genomes]
rs61896250	0.91[EUR][1000 genomes]
rs61896251	0.91[EUR][1000 genomes]
rs61896253	0.91[EUR][1000 genomes]
rs61896254	0.91[EUR][1000 genomes]
rs61896255	0.91[EUR][1000 genomes]
rs61896256	0.91[EUR][1000 genomes]
rs61896257	0.91[EUR][1000 genomes]
rs61896258	0.91[EUR][1000 genomes]
rs61896259	0.91[EUR][1000 genomes]
rs61896960	0.91[EUR][1000 genomes]
rs61896961	0.91[EUR][1000 genomes]
rs61896962	0.91[EUR][1000 genomes]
rs61896963	0.91[EUR][1000 genomes]
rs61896964	0.91[EUR][1000 genomes]
rs61896965	0.91[EUR][1000 genomes]
rs61896966	0.91[EUR][1000 genomes]
rs7102893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104912	0.92[EUR][1000 genomes]
rs7109136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112887	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7113601	0.92[EUR][1000 genomes]
rs7114852	0.91[EUR][1000 genomes]
rs7114865	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128453	0.94[EUR][1000 genomes]
rs7131505	0.92[EUR][1000 genomes]
rs7131616	0.92[EUR][1000 genomes]
rs7925870	0.91[EUR][1000 genomes]
rs7926784	0.91[EUR][1000 genomes]
rs7929811	0.91[EUR][1000 genomes]
rs7931694	0.91[EUR][1000 genomes]
rs7935009	0.91[EUR][1000 genomes]
rs7937610	0.91[EUR][1000 genomes]
rs7942859	0.91[EUR][1000 genomes]
rs7942981	0.91[EUR][1000 genomes]
rs7943492	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7945499	0.91[EUR][1000 genomes]
rs7948567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949262	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	esv2752628	chr11:55682604-55948184	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
9	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv832160	chr11:55780185-55916798	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
11	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1036290	chr11:55807948-55934985	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
13	esv2754280	chr11:55823576-55927591	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
14	esv2752700	chr11:55830265-55896015	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
15	nsv468575	chr11:55847945-55937954	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
16	nsv555095	chr11:55847945-55937954	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
17	esv3363781	chr11:55868278-55887125	Inactive region	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
18	esv3350337	chr11:55871128-55887960	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
19	nsv983023	chr11:55871572-55874547	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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