Variant report

Variant	rs61888309
Chromosome Location	chr11:56068794-56068795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:56068743-56068928	MCF10A-Er-Src	breast:	n/a	n/a
2	E2F4	chr11:56068696-56068823	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
OR8I1P	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12272629	1.00[EUR][1000 genomes]
rs17541821	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17541876	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17613345	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17627302	0.85[EUR][1000 genomes]
rs17628586	0.83[EUR][1000 genomes]
rs17628691	0.83[EUR][1000 genomes]
rs2035397	1.00[AFR][1000 genomes]
rs55706115	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55892403	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56077409	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56358425	1.00[AFR][1000 genomes]
rs61888282	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61888286	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61888289	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61888312	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61888313	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61901983	0.85[EUR][1000 genomes]
rs61902021	0.83[EUR][1000 genomes]
rs61902022	0.83[EUR][1000 genomes]
rs61902863	0.83[EUR][1000 genomes]
rs61902883	0.83[EUR][1000 genomes]
rs61902885	0.83[EUR][1000 genomes]
rs61903478	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61903482	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903484	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903485	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903486	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903487	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61903531	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61903536	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61903537	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61903541	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7103598	0.85[EUR][1000 genomes]
rs7106248	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7121384	0.94[EUR][1000 genomes]
rs7121385	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7124023	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7125690	0.97[EUR][1000 genomes]
rs7126549	0.83[EUR][1000 genomes]
rs716103	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs716104	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7951134	1.00[EUR][1000 genomes]
rs7951506	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
4	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832161	chr11:56046173-56166964	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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