Variant report

Variant	rs61889078
Chromosome Location	chr11:56622105-56622106
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10501358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17559037	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17559185	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17559600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17640103	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55815178	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61889065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61889069	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61889071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889108	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61902501	0.80[EUR][1000 genomes]
rs61902503	0.80[EUR][1000 genomes]
rs61902504	0.80[EUR][1000 genomes]
rs61902517	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61902556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903997	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7107067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7116073	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7122752	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048328	chr11:56471984-56649908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv2830406	chr11:56481955-56650124	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv469960	chr11:56605222-56704042	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56618800-56626600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:56620200-56622600	Weak transcription	A549	lung
3	chr11:56620400-56622600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:56620400-56622600	Weak transcription	NHEK	skin
5	chr11:56620600-56622600	Weak transcription	HMEC	breast
6	chr11:56620600-56624600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:56621600-56622400	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links