Variant report

Variant	rs61891768
Chromosome Location	chr11:10343162-10343163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10323501..10326681-chr11:10342125..10345667,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148926	Chromatin interaction
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1372810	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450265	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450266	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450268	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450275	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450276	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470686	0.97[EUR][1000 genomes]
rs1597450	0.89[EUR][1000 genomes]
rs16907654	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17292774	1.00[ASN][1000 genomes]
rs17294609	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294693	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17296211	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17296765	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358721	1.00[ASN][1000 genomes]
rs17358882	1.00[ASN][1000 genomes]
rs17359382	1.00[ASN][1000 genomes]
rs17360118	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2044781	0.92[EUR][1000 genomes]
rs28733206	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920149	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2957657	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2957686	0.97[EUR][1000 genomes]
rs4077089	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403799	0.89[EUR][1000 genomes]
rs61877264	1.00[ASN][1000 genomes]
rs61878654	1.00[ASN][1000 genomes]
rs61878655	1.00[ASN][1000 genomes]
rs61878657	1.00[ASN][1000 genomes]
rs61878658	1.00[ASN][1000 genomes]
rs61878659	1.00[ASN][1000 genomes]
rs61880160	1.00[ASN][1000 genomes]
rs61889783	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889785	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889795	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889796	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889802	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889815	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889816	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889817	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889836	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889840	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889842	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889843	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889845	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889846	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889847	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889956	0.82[AMR][1000 genomes]
rs61889957	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891762	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891764	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891767	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891770	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891771	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891773	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891775	0.99[EUR][1000 genomes]
rs61891776	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891793	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892569	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892572	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892573	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892575	1.00[ASN][1000 genomes]
rs61892593	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892594	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892595	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892596	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892597	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484142	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7103637	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104591	1.00[ASN][1000 genomes]
rs7105355	1.00[ASN][1000 genomes]
rs7107373	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108385	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109096	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7120043	1.00[ASN][1000 genomes]
rs7122370	1.00[ASN][1000 genomes]
rs7123541	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125823	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129220	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850458	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851648	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851670	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851674	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861738	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72861762	1.00[ASN][1000 genomes]
rs72861767	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72861799	1.00[ASN][1000 genomes]
rs7929332	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7930218	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933724	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935257	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7941320	0.92[EUR][1000 genomes]
rs7941557	0.98[EUR][1000 genomes]
rs7945990	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947210	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949974	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs896043	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9705133	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10330800-10344400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:10331400-10343800	Weak transcription	NHLF	lung
3	chr11:10331800-10344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:10336400-10343400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:10336400-10344000	Weak transcription	Osteobl	bone
6	chr11:10336600-10343200	Weak transcription	Stomach Mucosa	stomach
7	chr11:10337800-10343400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:10338400-10346800	Enhancers	NHDF-Ad	bronchial
9	chr11:10338800-10344000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:10338800-10344000	Weak transcription	HUVEC	blood vessel
11	chr11:10339000-10344000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:10339200-10344000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:10339200-10344400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:10339400-10344400	Weak transcription	Fetal Kidney	kidney
15	chr11:10339600-10343400	Weak transcription	Placenta	Placenta
16	chr11:10339600-10344000	Weak transcription	Brain Anterior Caudate	brain
17	chr11:10339600-10344000	Weak transcription	Brain Substantia Nigra	brain
18	chr11:10339600-10348800	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:10340000-10344000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:10340200-10343400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:10340200-10344000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:10340200-10344000	Weak transcription	Right Atrium	heart
23	chr11:10340200-10344200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:10340200-10344200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:10340200-10344400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:10340200-10344400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:10340200-10347400	Weak transcription	Pancreas	Pancrea
28	chr11:10340400-10343400	Weak transcription	Fetal Intestine Large	intestine
29	chr11:10340400-10343400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:10340400-10343400	Weak transcription	HSMM	muscle
31	chr11:10340400-10344000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:10340400-10344000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr11:10340400-10344000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:10340400-10344000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:10340400-10344000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:10340400-10344000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:10340400-10344000	Weak transcription	Fetal Intestine Small	intestine
38	chr11:10340400-10344000	Weak transcription	Psoas Muscle	Psoas
39	chr11:10340400-10344000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:10340400-10344000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:10340400-10344000	Weak transcription	NHEK	skin
42	chr11:10340400-10344200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:10340400-10344200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:10340400-10350000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:10340600-10344000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr11:10340600-10344000	Weak transcription	Right Ventricle	heart
47	chr11:10340600-10344000	Weak transcription	Dnd41	blood
48	chr11:10340600-10344400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:10340800-10344000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr11:10340800-10344000	Weak transcription	Left Ventricle	heart

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