Variant report

Variant	rs61893919
Chromosome Location	chr11:72263803-72263804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs341071	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs341072	0.88[EUR][1000 genomes]
rs55874615	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61893918	0.82[AMR][1000 genomes]
rs61893920	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61893921	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61893923	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61893924	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61893925	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61893927	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61893928	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
2	nsv897910	chr11:72154529-72281884	Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3527721	chr11:72261655-72264100	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3527722	chr11:72261655-72264100	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72262200-72265200	Enhancers	Fetal Muscle Leg	muscle
2	chr11:72263000-72264200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:72263200-72264800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:72263400-72264000	Enhancers	HMEC	breast
5	chr11:72263400-72264000	Enhancers	NHEK	skin
6	chr11:72263400-72265400	Enhancers	HSMM	muscle
7	chr11:72263400-72265800	Enhancers	HSMMtube	muscle
8	chr11:72263600-72264000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr11:72263600-72264600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:72263800-72264000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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