Variant report

Variant	rs61895104
Chromosome Location	chr11:47527795-47527796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47495876..47498563-chr11:47527719..47530859,3	K562	blood:
2	chr11:47527749..47529924-chr11:47868139..47869931,2	K562	blood:
3	chr11:47521843..47524187-chr11:47526565..47529247,2	MCF-7	breast:
4	chr11:47495876..47498563-chr11:47527719..47529777,2	K562	blood:
5	chr11:47520398..47522302-chr11:47526917..47528818,2	K562	blood:

Variant related genes	Relation type
ENSG00000030066	Chromatin interaction
ENSG00000149187	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12285933	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17726706	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17726787	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45547231	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs45603036	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs45617144	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56007045	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57680742	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61895077	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61895081	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61895102	0.90[EUR][1000 genomes]
rs61895111	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61895113	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61897424	0.86[EUR][1000 genomes]
rs61897426	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61897429	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61897430	0.87[EUR][1000 genomes]
rs61897432	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61897434	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7102372	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7104800	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7108608	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7116534	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9919527	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9919657	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3444665	chr11:47525601-47528351	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv512223	chr11:47525659-47528095	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3469397	chr11:47525993-47528119	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3469408	chr11:47525993-47528119	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47507000-47528200	Weak transcription	Small Intestine	intestine
2	chr11:47508400-47530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:47509000-47534400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:47509200-47530400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:47510200-47536800	Weak transcription	Fetal Kidney	kidney
6	chr11:47510800-47529800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:47511200-47528600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:47513400-47528400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:47515600-47528200	Weak transcription	NH-A	brain
10	chr11:47516800-47530200	Weak transcription	Colonic Mucosa	Colon
11	chr11:47519000-47529200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:47520000-47528200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:47520400-47528800	Weak transcription	Thymus	Thymus
14	chr11:47520400-47529000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:47521600-47528600	Weak transcription	A549	lung
16	chr11:47521600-47529800	Weak transcription	Gastric	stomach
17	chr11:47521600-47530200	Weak transcription	Right Ventricle	heart
18	chr11:47521600-47531000	Weak transcription	Lung	lung
19	chr11:47521600-47534000	Weak transcription	Aorta	Aorta
20	chr11:47521600-47534400	Weak transcription	HUVEC	blood vessel
21	chr11:47521800-47527800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:47521800-47528000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:47521800-47528000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:47521800-47528000	Weak transcription	Ovary	ovary
25	chr11:47521800-47528000	Weak transcription	Stomach Mucosa	stomach
26	chr11:47521800-47529000	Weak transcription	Brain Germinal Matrix	brain
27	chr11:47521800-47529200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:47521800-47531000	Weak transcription	Spleen	Spleen
29	chr11:47522000-47528000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:47522000-47528200	Weak transcription	NHDF-Ad	bronchial
31	chr11:47522200-47528200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:47522200-47528400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:47522200-47528400	Weak transcription	HMEC	breast
34	chr11:47522400-47528000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:47522400-47528000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:47522400-47528800	Weak transcription	Fetal Intestine Large	intestine
37	chr11:47522600-47528000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:47522600-47528800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:47522800-47528000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:47522800-47528000	Weak transcription	Osteobl	bone
41	chr11:47522800-47530400	Weak transcription	HepG2	liver
42	chr11:47522800-47536200	Weak transcription	Fetal Brain Female	brain
43	chr11:47523000-47528000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:47523000-47528000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:47523000-47528000	Weak transcription	Brain Substantia Nigra	brain
46	chr11:47523000-47528000	Weak transcription	Fetal Heart	heart
47	chr11:47523000-47528000	Weak transcription	HSMMtube	muscle
48	chr11:47523000-47528000	Weak transcription	NHLF	lung
49	chr11:47523000-47528200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:47523000-47528200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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