Variant report

Variant	rs61895112
Chromosome Location	chr11:47560433-47560434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47559176..47561794-chr11:47565770..47569453,3	MCF-7	breast:
2	chr11:47556312..47559007-chr11:47559496..47562082,2	MCF-7	breast:
3	chr11:47560397..47564902-chr11:47572106..47576382,5	K562	blood:
4	chr11:47557985..47562133-chr11:47565496..47569267,5	K562	blood:
5	chr11:47553494..47556204-chr11:47558570..47560706,2	MCF-7	breast:
6	chr11:47559425..47562180-chr11:47787809..47790280,2	MCF-7	breast:
7	chr11:47556325..47561893-chr11:47562676..47568878,7	K562	blood:
8	chr11:47546300..47548037-chr11:47559211..47561891,2	K562	blood:
9	chr11:47560397..47563182-chr11:47569730..47573934,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000109920	Chromatin interaction
ENSG00000149187	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10838725	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11039266	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11039284	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12224672	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12225051	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12361415	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2280231	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6485758	0.81[EUR][1000 genomes]
rs7103835	0.87[ASN][1000 genomes]
rs7118178	0.89[AMR][1000 genomes]
rs7933019	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61895112	FNBP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47546000-47572400	Weak transcription	Fetal Intestine Large	intestine
2	chr11:47546400-47560800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:47546400-47561200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:47546400-47564200	Weak transcription	Thymus	Thymus
5	chr11:47546400-47573400	Weak transcription	Colonic Mucosa	Colon
6	chr11:47546400-47573600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:47546600-47561000	Weak transcription	Stomach Mucosa	stomach
8	chr11:47547400-47560800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:47547800-47562000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:47550600-47561000	Weak transcription	Placenta	Placenta
11	chr11:47551000-47563200	Enhancers	Fetal Brain Male	brain
12	chr11:47552600-47560800	Weak transcription	Pancreas	Pancrea
13	chr11:47553000-47573200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:47554200-47561400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:47554400-47561200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:47554400-47561600	Weak transcription	Fetal Kidney	kidney
17	chr11:47554400-47572400	Weak transcription	Aorta	Aorta
18	chr11:47554600-47561200	Weak transcription	HepG2	liver
19	chr11:47554800-47571600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:47554800-47572400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:47555000-47560800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:47555200-47561000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:47555400-47560800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:47555400-47561200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:47555800-47560800	Weak transcription	Right Ventricle	heart
26	chr11:47556400-47561200	Weak transcription	Primary B cells from cord blood	blood
27	chr11:47556800-47561400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr11:47557000-47560800	Weak transcription	Primary T cells from cord blood	blood
29	chr11:47557000-47561400	Weak transcription	K562	blood
30	chr11:47557600-47565600	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:47557800-47563000	Enhancers	Adipose Nuclei	Adipose
32	chr11:47557800-47567000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:47558000-47560800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:47558000-47561400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr11:47558000-47562600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:47558200-47560800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:47558200-47560800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:47558200-47560800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:47558200-47560800	Weak transcription	Fetal Muscle Leg	muscle
40	chr11:47558200-47560800	Weak transcription	Lung	lung
41	chr11:47558200-47561200	Weak transcription	Spleen	Spleen
42	chr11:47558400-47561600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:47558400-47561800	Weak transcription	Fetal Thymus	thymus
44	chr11:47558400-47572600	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr11:47558600-47560800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr11:47558600-47560800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:47558600-47561000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:47558600-47561200	Weak transcription	GM12878-XiMat	blood
49	chr11:47558800-47560800	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr11:47558800-47565600	Enhancers	Primary T cells fromperipheralblood	blood

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