Variant report

Variant	rs61896121
Chromosome Location	chr11:47081470-47081471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12574558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12578030	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17197500	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17197619	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17197710	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17790246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790306	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790336	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790342	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790390	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790420	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4572092	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647713	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55968738	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57012996	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57964319	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59689332	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60041842	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs60088916	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60174717	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60201196	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60335739	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61142746	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61896120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896124	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896125	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896131	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896132	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897776	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897777	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897782	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61897784	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61897786	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61897788	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61897791	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61897851	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897852	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897853	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61897854	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61897855	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61897856	0.93[ASN][1000 genomes]
rs61897858	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61899284	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61899285	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61899293	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61899294	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv508627	chr11:47052659-47084007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47061400-47082800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:47068400-47092400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:47071600-47089000	Weak transcription	Gastric	stomach
4	chr11:47072200-47082000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr11:47072600-47093000	Weak transcription	Ovary	ovary
6	chr11:47072800-47082200	Weak transcription	A549	lung
7	chr11:47072800-47093000	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:47073200-47082600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:47073200-47092400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:47073600-47088600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:47073800-47083800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:47073800-47092200	Weak transcription	Placenta	Placenta
13	chr11:47073800-47100200	Weak transcription	Thymus	Thymus
14	chr11:47074600-47082200	Weak transcription	Brain Substantia Nigra	brain
15	chr11:47074600-47082800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:47075000-47081600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:47075200-47087400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:47075200-47093400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:47075400-47082800	Weak transcription	Esophagus	oesophagus
20	chr11:47075800-47093400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:47077600-47085800	Weak transcription	HepG2	liver
22	chr11:47077600-47113200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:47077800-47082200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:47077800-47088200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:47078000-47082200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:47078000-47097000	Weak transcription	Aorta	Aorta
27	chr11:47078200-47082200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:47078200-47093200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:47078400-47082000	Weak transcription	HSMM	muscle
30	chr11:47078400-47082000	Weak transcription	Osteobl	bone
31	chr11:47078400-47082200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:47078400-47082400	Weak transcription	NHLF	lung
33	chr11:47078400-47092400	Weak transcription	Small Intestine	intestine
34	chr11:47078600-47082200	Weak transcription	NH-A	brain
35	chr11:47078600-47082200	Weak transcription	NHDF-Ad	bronchial
36	chr11:47078600-47082400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:47078600-47092600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:47078800-47082400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr11:47079000-47082000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:47079200-47082000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr11:47079200-47082000	Weak transcription	HSMMtube	muscle
42	chr11:47079400-47081600	Weak transcription	K562	blood
43	chr11:47079400-47082000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:47079400-47082200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:47079400-47082200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr11:47079400-47082200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:47079400-47082400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:47079400-47093000	Weak transcription	Fetal Brain Male	brain
49	chr11:47079600-47082200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:47079600-47082200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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