Variant report

Variant	rs61896124
Chromosome Location	chr11:47092682-47092683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12574558	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576831	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576839	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12578030	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17197500	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17197619	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17197710	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17790246	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790306	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790336	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790342	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790390	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790420	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4572092	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647713	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55968738	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57012996	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57964319	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59689332	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60041842	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60088916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60174717	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60201196	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60335739	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61142746	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61896120	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896121	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896122	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896125	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896126	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896131	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896132	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897776	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897777	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897782	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897784	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897786	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61897788	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897791	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61897843	0.82[EUR][1000 genomes]
rs61897851	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897852	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897853	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61897854	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61897855	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61897856	0.93[ASN][1000 genomes]
rs61897858	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61899284	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61899285	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61899293	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61899294	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47072600-47093000	Weak transcription	Ovary	ovary
2	chr11:47072800-47093000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:47073800-47100200	Weak transcription	Thymus	Thymus
4	chr11:47075200-47093400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:47075800-47093400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:47077600-47113200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:47078000-47097000	Weak transcription	Aorta	Aorta
8	chr11:47078200-47093200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:47079400-47093000	Weak transcription	Fetal Brain Male	brain
10	chr11:47080600-47093200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:47080800-47103000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:47083200-47093000	Weak transcription	Brain Anterior Caudate	brain
13	chr11:47083200-47093000	Weak transcription	Brain Substantia Nigra	brain
14	chr11:47083200-47100600	Weak transcription	NH-A	brain
15	chr11:47083600-47092800	Weak transcription	A549	lung
16	chr11:47084600-47093000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:47084600-47093400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:47084600-47093400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:47084600-47093400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:47084600-47093400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr11:47084600-47098400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:47085800-47102400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:47089200-47092800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:47089200-47093200	Weak transcription	NHEK	skin
25	chr11:47089200-47093400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:47089200-47093400	Weak transcription	HSMM	muscle
27	chr11:47089400-47093000	Weak transcription	NHDF-Ad	bronchial
28	chr11:47089400-47097000	Weak transcription	Gastric	stomach
29	chr11:47089400-47107000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:47089400-47120800	Weak transcription	Hela-S3	cervix
31	chr11:47090000-47096000	Weak transcription	Pancreas	Pancrea
32	chr11:47091200-47092800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:47091600-47093000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:47091600-47094000	Enhancers	Fetal Muscle Leg	muscle
35	chr11:47091600-47095000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:47092000-47093000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:47092000-47093800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr11:47092000-47094000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr11:47092200-47093200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:47092200-47093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr11:47092200-47093800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:47092200-47093800	Enhancers	Placenta	Placenta
43	chr11:47092400-47093000	Enhancers	Fetal Kidney	kidney
44	chr11:47092400-47093000	Enhancers	Fetal Lung	lung
45	chr11:47092400-47093400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:47092400-47093400	Enhancers	Stomach Smooth Muscle	stomach
47	chr11:47092400-47093600	Enhancers	Fetal Intestine Small	intestine
48	chr11:47092400-47093600	Enhancers	HSMMtube	muscle
49	chr11:47092400-47093800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr11:47092400-47093800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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