Variant report

Variant	rs61896136
Chromosome Location	chr11:47120299-47120300
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10501319	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10742797	0.84[ASN][1000 genomes]
rs10769225	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10769226	0.85[ASN][1000 genomes]
rs10769227	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10769228	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10769248	0.86[ASN][1000 genomes]
rs10838635	0.81[ASN][1000 genomes]
rs10838640	0.85[ASN][1000 genomes]
rs10838641	0.87[ASN][1000 genomes]
rs10838644	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10838646	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10838652	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838658	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838662	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838663	0.96[ASN][1000 genomes]
rs10838664	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039033	0.82[ASN][1000 genomes]
rs11039057	0.81[ASN][1000 genomes]
rs11039080	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039081	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11039098	0.88[ASN][1000 genomes]
rs11600292	0.81[ASN][1000 genomes]
rs11601798	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11602250	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11603373	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11608083	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12417519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574410	0.96[ASN][1000 genomes]
rs17790204	0.83[ASN][1000 genomes]
rs2087215	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2279438	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2279439	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34340483	0.81[ASN][1000 genomes]
rs3758666	0.84[ASN][1000 genomes]
rs3922684	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4269876	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4315028	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4394802	0.84[ASN][1000 genomes]
rs4494268	0.87[ASN][1000 genomes]
rs4498951	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4528282	0.85[ASN][1000 genomes]
rs4548577	0.87[ASN][1000 genomes]
rs4576779	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4581406	0.81[ASN][1000 genomes]
rs4587689	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752815	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4752816	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4752965	0.96[ASN][1000 genomes]
rs4752968	0.87[ASN][1000 genomes]
rs4752969	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896133	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897787	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61897844	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61897857	0.84[ASN][1000 genomes]
rs6485715	0.84[ASN][1000 genomes]
rs6485716	0.83[ASN][1000 genomes]
rs6485726	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7108822	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7111270	0.84[ASN][1000 genomes]
rs7112854	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113108	0.91[AFR][1000 genomes]
rs7114683	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7123632	0.85[ASN][1000 genomes]
rs7124648	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7126005	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7127741	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128193	0.82[ASN][1000 genomes]
rs7128650	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7130006	0.90[ASN][1000 genomes]
rs7130947	0.84[ASN][1000 genomes]
rs7929688	0.84[ASN][1000 genomes]
rs7935346	0.86[ASN][1000 genomes]
rs7937410	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7938169	0.84[ASN][1000 genomes]
rs7939786	0.84[ASN][1000 genomes]
rs7940240	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7945558	0.81[ASN][1000 genomes]
rs7946739	0.81[ASN][1000 genomes]
rs7950753	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7951979	0.92[ASN][1000 genomes]
rs901747	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs923324	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541032	chr11:47108596-47121969	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv541033	chr11:47113897-47125838	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47089400-47120800	Weak transcription	Hela-S3	cervix
2	chr11:47094000-47125200	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:47100800-47121000	Weak transcription	HSMMtube	muscle
4	chr11:47106200-47121000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:47110000-47126000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:47115400-47122000	Weak transcription	Pancreas	Pancrea
7	chr11:47117000-47120400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:47117400-47120800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:47117400-47125800	Weak transcription	Fetal Intestine Small	intestine
10	chr11:47118200-47120400	Weak transcription	Fetal Lung	lung
11	chr11:47118200-47120800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:47118200-47121200	Weak transcription	Brain Anterior Caudate	brain
13	chr11:47118800-47123000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:47120000-47120600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:47120000-47121200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:47120000-47121200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:47120000-47121800	Enhancers	HepG2	liver
18	chr11:47120000-47122200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:47120000-47122200	Enhancers	Brain Hippocampus Middle	brain
20	chr11:47120200-47120400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:47120200-47121000	Enhancers	Gastric	stomach

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