Variant report

Variant	rs61896242
Chromosome Location	chr11:55743529-55743530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 220 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:186)

rs_ID	r²[population]
rs12099295	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17510876	0.89[EUR][1000 genomes]
rs17511051	0.89[EUR][1000 genomes]
rs17514608	0.90[EUR][1000 genomes]
rs17527401	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17527710	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17527788	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17527850	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17527864	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17528782	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17528803	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17530318	0.84[EUR][1000 genomes]
rs17530360	0.84[EUR][1000 genomes]
rs17530416	0.84[EUR][1000 genomes]
rs17530423	0.84[EUR][1000 genomes]
rs17595801	0.89[EUR][1000 genomes]
rs17596694	0.89[EUR][1000 genomes]
rs17597646	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17598017	0.89[EUR][1000 genomes]
rs17598045	0.89[EUR][1000 genomes]
rs17598094	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17599457	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17599471	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17599899	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17599913	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17600692	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17600784	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17600820	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17603011	0.84[EUR][1000 genomes]
rs28421520	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28537497	0.84[EUR][1000 genomes]
rs28688517	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5018553	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55696205	0.84[EUR][1000 genomes]
rs55797579	0.89[AMR][1000 genomes]
rs55833459	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55833816	0.89[EUR][1000 genomes]
rs56116804	0.87[EUR][1000 genomes]
rs56176720	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56178210	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56208265	0.84[EUR][1000 genomes]
rs56301431	0.90[EUR][1000 genomes]
rs56370444	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56393785	0.84[EUR][1000 genomes]
rs56402650	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61746167	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61887074	0.84[EUR][1000 genomes]
rs61887088	0.84[EUR][1000 genomes]
rs61887089	0.84[EUR][1000 genomes]
rs61887090	0.84[EUR][1000 genomes]
rs61887091	0.84[EUR][1000 genomes]
rs61887092	0.84[EUR][1000 genomes]
rs61887137	0.83[EUR][1000 genomes]
rs61887142	0.84[EUR][1000 genomes]
rs61887143	0.83[EUR][1000 genomes]
rs61888467	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61888468	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61888469	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61888470	0.90[EUR][1000 genomes]
rs61888471	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61888472	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61888473	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61888545	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61888546	0.90[EUR][1000 genomes]
rs61889622	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61889623	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61889973	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61889974	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61889975	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61891189	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61891190	0.84[EUR][1000 genomes]
rs61891191	0.84[EUR][1000 genomes]
rs61891194	0.84[EUR][1000 genomes]
rs61891195	0.84[EUR][1000 genomes]
rs61891196	0.90[EUR][1000 genomes]
rs61891197	0.84[EUR][1000 genomes]
rs61891198	0.84[EUR][1000 genomes]
rs61891199	0.84[EUR][1000 genomes]
rs61891201	0.84[EUR][1000 genomes]
rs61891202	0.84[EUR][1000 genomes]
rs61891203	0.84[EUR][1000 genomes]
rs61891205	0.84[EUR][1000 genomes]
rs61891206	0.84[EUR][1000 genomes]
rs61891209	0.82[EUR][1000 genomes]
rs61891210	0.84[EUR][1000 genomes]
rs61891211	0.84[EUR][1000 genomes]
rs61894170	0.89[EUR][1000 genomes]
rs61894171	0.89[EUR][1000 genomes]
rs61894172	0.89[EUR][1000 genomes]
rs61894173	0.89[EUR][1000 genomes]
rs61894174	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61894176	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61894198	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61894199	0.89[EUR][1000 genomes]
rs61894201	0.89[EUR][1000 genomes]
rs61894202	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61894203	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61894213	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61894214	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61894215	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61894216	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61895181	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895182	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895183	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895184	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895240	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895241	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895243	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895244	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895245	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895246	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895247	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895248	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895249	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895250	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61895251	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895252	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895253	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895254	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895255	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895256	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895257	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895258	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61895259	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896168	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896169	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896182	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896183	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896184	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896235	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896236	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61896237	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896238	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896240	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896241	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896244	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896245	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896247	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896248	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896249	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896250	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896251	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896253	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896254	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896255	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896256	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896257	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896258	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896259	0.90[EUR][1000 genomes]
rs61896960	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896961	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896962	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896963	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896964	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896965	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61896966	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61897479	0.89[AMR][1000 genomes]
rs61897558	0.89[EUR][1000 genomes]
rs61897559	0.89[EUR][1000 genomes]
rs7102893	0.84[EUR][1000 genomes]
rs7104912	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7109136	0.84[EUR][1000 genomes]
rs7109807	0.84[EUR][1000 genomes]
rs7110689	0.84[EUR][1000 genomes]
rs7113601	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7114852	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7114865	0.84[EUR][1000 genomes]
rs7128453	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7131505	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7131616	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7925870	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7926784	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7929811	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7931694	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7935009	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7937610	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7942859	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7942981	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7943492	0.84[EUR][1000 genomes]
rs7945499	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7948567	0.84[EUR][1000 genomes]
rs7949262	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9666864	0.89[EUR][1000 genomes]
rs9667335	0.89[EUR][1000 genomes]
rs9667688	0.89[EUR][1000 genomes]
rs9667699	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
7	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv1044174	chr11:55501796-55862172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv437718	chr11:55679983-55828756	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv2752628	chr11:55682604-55948184	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv468568	chr11:55682795-55819544	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv555080	chr11:55682795-55819544	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv1042542	chr11:55683985-55826179	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv469959	chr11:55685556-55819544	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	esv3693086	chr11:55685556-55822802	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv517590	chr11:55685556-55836620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
18	nsv1048664	chr11:55685799-55818882	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv1053592	chr11:55685799-55819947	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
20	nsv1043632	chr11:55685799-55823892	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
21	nsv1048070	chr11:55685799-55825580	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
22	nsv1050801	chr11:55685799-55826179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
23	nsv1053326	chr11:55685799-55829456	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
24	esv34592	chr11:55685799-55842512	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
25	esv34825	chr11:55685824-55842512	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
26	nsv1053583	chr11:55688373-55826179	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
27	nsv1036558	chr11:55689110-55826179	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
28	nsv1047031	chr11:55689110-55827538	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
29	nsv1053027	chr11:55689863-55826179	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
30	esv2757446	chr11:55689863-55849156	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
31	esv2759829	chr11:55689863-55849156	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
32	nsv533150	chr11:55703736-55816312	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
33	nsv555093	chr11:55707050-55763943	Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
34	nsv975924	chr11:55741474-55751535	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:55741400-55746000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:55742600-55745600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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