Variant report

Variant	rs61897273
Chromosome Location	chr2:214221096-214221097
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs11821565	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11822181	0.89[AFR][1000 genomes]
rs11822498	0.89[AFR][1000 genomes]
rs11823938	0.89[AFR][1000 genomes]
rs11824344	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11824784	0.89[AFR][1000 genomes]
rs11825014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826744	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11827274	0.83[EUR][1000 genomes]
rs11828095	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11828163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828784	0.81[EUR][1000 genomes]
rs2204231	0.85[EUR][1000 genomes]
rs2204238	0.97[EUR][1000 genomes]
rs2204240	0.97[EUR][1000 genomes]
rs2217761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2335084	0.85[EUR][1000 genomes]
rs4341558	0.85[EUR][1000 genomes]
rs55637752	0.81[EUR][1000 genomes]
rs55693437	0.81[EUR][1000 genomes]
rs55744313	0.85[EUR][1000 genomes]
rs55875907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55905894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55956850	0.85[EUR][1000 genomes]
rs56136558	1.00[EUR][1000 genomes]
rs56190771	0.85[EUR][1000 genomes]
rs56234219	0.83[EUR][1000 genomes]
rs56270386	0.80[EUR][1000 genomes]
rs61895860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895915	0.83[EUR][1000 genomes]
rs61895918	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61895923	1.00[EUR][1000 genomes]
rs61895924	0.97[EUR][1000 genomes]
rs61895934	1.00[EUR][1000 genomes]
rs61895936	0.91[AMR][1000 genomes]
rs61895937	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895940	0.88[EUR][1000 genomes]
rs61895944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895949	1.00[EUR][1000 genomes]
rs61895950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897265	1.00[EUR][1000 genomes]
rs61897266	1.00[EUR][1000 genomes]
rs61897267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61897275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897284	0.89[EUR][1000 genomes]
rs61897285	0.91[EUR][1000 genomes]
rs61897286	1.00[EUR][1000 genomes]
rs61897287	0.92[EUR][1000 genomes]
rs61897288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897289	1.00[EUR][1000 genomes]
rs61897309	1.00[EUR][1000 genomes]
rs61897310	1.00[EUR][1000 genomes]
rs61897311	0.87[EUR][1000 genomes]
rs61897312	1.00[EUR][1000 genomes]
rs61897313	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61897314	0.97[EUR][1000 genomes]
rs61897318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61897319	0.97[EUR][1000 genomes]
rs61897323	0.82[EUR][1000 genomes]
rs61897328	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61897329	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61897332	0.83[AMR][1000 genomes]
rs61897333	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61897334	0.90[AFR][1000 genomes]
rs61898068	0.81[EUR][1000 genomes]
rs61898069	0.81[EUR][1000 genomes]
rs61898073	0.81[EUR][1000 genomes]
rs61898074	0.81[EUR][1000 genomes]
rs61898075	0.85[EUR][1000 genomes]
rs61898076	0.85[EUR][1000 genomes]
rs61898077	0.85[EUR][1000 genomes]
rs61898112	0.85[EUR][1000 genomes]
rs61898116	0.85[EUR][1000 genomes]
rs61898129	0.85[EUR][1000 genomes]
rs61898130	0.83[EUR][1000 genomes]
rs61898132	0.85[EUR][1000 genomes]
rs61898136	0.85[EUR][1000 genomes]
rs61898138	0.83[EUR][1000 genomes]
rs61898139	0.83[EUR][1000 genomes]
rs61898140	0.83[EUR][1000 genomes]
rs61898141	0.83[EUR][1000 genomes]
rs61898142	0.83[EUR][1000 genomes]
rs61898145	0.85[EUR][1000 genomes]
rs61898148	0.80[EUR][1000 genomes]
rs61898149	0.85[EUR][1000 genomes]
rs61898150	0.85[EUR][1000 genomes]
rs61898158	0.89[EUR][1000 genomes]
rs61898159	0.83[EUR][1000 genomes]
rs7113707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7127125	0.97[EUR][1000 genomes]
rs7929786	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7930167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937169	0.83[AMR][1000 genomes]
rs7938008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9666022	0.85[EUR][1000 genomes]
rs9666206	0.85[EUR][1000 genomes]
rs9666460	0.81[EUR][1000 genomes]
rs9666612	0.83[EUR][1000 genomes]
rs9667029	0.85[EUR][1000 genomes]
rs9736366	1.00[EUR][1000 genomes]
rs9736982	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533296	chr2:213925872-214645388	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv1801673	chr2:214027353-214365853	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv428071	chr2:214027353-214365853	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv834531	chr2:214115624-214302243	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv875820	chr2:214126478-214280050	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1014793	chr2:214177115-214305716	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv875821	chr2:214183769-214346396	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv875822	chr2:214183769-214346396	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1795344	chr2:214191277-214365853	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1829778	chr2:214191277-214365853	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1842951	chr2:214191277-214365853	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv834532	chr2:214191277-214365853	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv428406	chr2:214191277-214365853	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv523669	chr2:214214297-214226585	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3692760	chr2:214214297-214231045	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv997332	chr2:214216056-214343089	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:214195400-214232800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:214203800-214229200	Weak transcription	Pancreas	Pancrea
3	chr2:214208400-214233000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:214219000-214229200	Weak transcription	Liver	Liver

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