Variant report

Variant	rs61897479
Chromosome Location	chr11:55638666-55638667
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs12099295	0.86[EUR][1000 genomes]
rs17510876	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17511051	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17514608	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17527401	0.86[EUR][1000 genomes]
rs17527710	0.85[EUR][1000 genomes]
rs17527788	0.86[EUR][1000 genomes]
rs17527850	0.86[EUR][1000 genomes]
rs17527864	0.86[EUR][1000 genomes]
rs17595801	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17596694	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17597646	0.87[EUR][1000 genomes]
rs17598017	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17598045	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17598094	0.87[EUR][1000 genomes]
rs17599457	0.86[EUR][1000 genomes]
rs17599471	0.86[EUR][1000 genomes]
rs17599899	0.86[EUR][1000 genomes]
rs17599913	0.86[EUR][1000 genomes]
rs17600692	0.83[EUR][1000 genomes]
rs17600784	0.83[EUR][1000 genomes]
rs17600820	0.83[EUR][1000 genomes]
rs5018553	0.86[EUR][1000 genomes]
rs55797579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55833459	0.86[EUR][1000 genomes]
rs55833816	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56116804	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56176720	0.86[EUR][1000 genomes]
rs56178210	0.86[EUR][1000 genomes]
rs56301431	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56370444	0.86[EUR][1000 genomes]
rs56402650	0.85[EUR][1000 genomes]
rs61888468	0.83[EUR][1000 genomes]
rs61888469	0.83[EUR][1000 genomes]
rs61888470	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61888471	0.83[EUR][1000 genomes]
rs61888472	0.83[EUR][1000 genomes]
rs61888473	0.83[EUR][1000 genomes]
rs61888545	0.83[EUR][1000 genomes]
rs61888546	0.83[EUR][1000 genomes]
rs61889973	0.83[EUR][1000 genomes]
rs61894170	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61894171	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61894172	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61894173	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61894174	0.87[EUR][1000 genomes]
rs61894176	0.87[EUR][1000 genomes]
rs61894198	0.87[EUR][1000 genomes]
rs61894199	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61894201	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61894202	0.87[EUR][1000 genomes]
rs61894203	0.87[EUR][1000 genomes]
rs61894213	0.84[EUR][1000 genomes]
rs61894214	0.84[EUR][1000 genomes]
rs61894215	0.84[EUR][1000 genomes]
rs61894216	0.83[EUR][1000 genomes]
rs61895181	0.86[EUR][1000 genomes]
rs61895182	0.86[EUR][1000 genomes]
rs61895183	0.86[EUR][1000 genomes]
rs61895184	0.86[EUR][1000 genomes]
rs61895240	0.86[EUR][1000 genomes]
rs61895241	0.86[EUR][1000 genomes]
rs61895243	0.86[EUR][1000 genomes]
rs61895244	0.86[EUR][1000 genomes]
rs61895245	0.86[EUR][1000 genomes]
rs61895246	0.86[EUR][1000 genomes]
rs61895247	0.86[EUR][1000 genomes]
rs61895248	0.86[EUR][1000 genomes]
rs61895249	0.86[EUR][1000 genomes]
rs61895250	0.89[AMR][1000 genomes]
rs61895251	0.86[EUR][1000 genomes]
rs61895252	0.86[EUR][1000 genomes]
rs61895253	0.86[EUR][1000 genomes]
rs61895254	0.86[EUR][1000 genomes]
rs61895255	0.86[EUR][1000 genomes]
rs61895256	0.86[EUR][1000 genomes]
rs61895257	0.86[EUR][1000 genomes]
rs61895258	0.86[EUR][1000 genomes]
rs61895259	0.86[EUR][1000 genomes]
rs61896168	0.86[EUR][1000 genomes]
rs61896169	0.86[EUR][1000 genomes]
rs61896182	0.86[EUR][1000 genomes]
rs61896183	0.86[EUR][1000 genomes]
rs61896184	0.86[EUR][1000 genomes]
rs61896235	0.86[EUR][1000 genomes]
rs61896236	0.85[EUR][1000 genomes]
rs61896237	0.86[EUR][1000 genomes]
rs61896238	0.86[EUR][1000 genomes]
rs61896240	0.86[EUR][1000 genomes]
rs61896241	0.86[EUR][1000 genomes]
rs61896242	0.89[AMR][1000 genomes]
rs61896244	0.86[EUR][1000 genomes]
rs61896245	0.86[EUR][1000 genomes]
rs61896247	0.86[EUR][1000 genomes]
rs61896248	0.86[EUR][1000 genomes]
rs61896249	0.86[EUR][1000 genomes]
rs61896250	0.86[EUR][1000 genomes]
rs61896251	0.86[EUR][1000 genomes]
rs61896253	0.86[EUR][1000 genomes]
rs61896254	0.86[EUR][1000 genomes]
rs61896255	0.86[EUR][1000 genomes]
rs61896256	0.86[EUR][1000 genomes]
rs61896257	0.86[EUR][1000 genomes]
rs61896258	0.86[EUR][1000 genomes]
rs61896259	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61896960	0.86[EUR][1000 genomes]
rs61896961	0.86[EUR][1000 genomes]
rs61896962	0.86[EUR][1000 genomes]
rs61896963	0.86[EUR][1000 genomes]
rs61896964	0.86[EUR][1000 genomes]
rs61896965	0.86[EUR][1000 genomes]
rs61896966	0.86[EUR][1000 genomes]
rs61897481	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897558	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61897559	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7104912	0.81[EUR][1000 genomes]
rs7113601	0.81[EUR][1000 genomes]
rs7114852	0.86[EUR][1000 genomes]
rs7118321	1.00[AFR][1000 genomes]
rs7128453	0.83[EUR][1000 genomes]
rs7131505	0.81[EUR][1000 genomes]
rs7131616	0.81[EUR][1000 genomes]
rs7925870	0.86[EUR][1000 genomes]
rs7926784	0.86[EUR][1000 genomes]
rs7929811	0.86[EUR][1000 genomes]
rs7931694	0.86[EUR][1000 genomes]
rs7935009	0.86[EUR][1000 genomes]
rs7937610	0.86[EUR][1000 genomes]
rs7942859	0.86[EUR][1000 genomes]
rs7942981	0.86[EUR][1000 genomes]
rs7945499	0.86[EUR][1000 genomes]
rs7949262	0.86[EUR][1000 genomes]
rs7951100	1.00[AFR][1000 genomes]
rs9666864	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9667335	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9667688	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9667699	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
5	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
9	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv1044174	chr11:55501796-55862172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	nsv832158	chr11:55550160-55701309	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv972028	chr11:55634700-55663452	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:55638000-55640200	Weak transcription	Brain Inferior Temporal Lobe	brain

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