Variant report

Variant	rs61897777
Chromosome Location	chr11:47133604-47133605
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12574558	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576831	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576839	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12578030	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17197500	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17197619	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17197710	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17790246	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790306	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790336	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790342	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790390	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790420	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572092	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4647713	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55968738	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57012996	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57964319	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59689332	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60041842	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60088916	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60174717	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60201196	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60335739	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61142746	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61896120	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896121	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896122	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896124	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896125	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896126	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896131	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896132	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897776	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897782	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897784	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897786	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61897788	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897791	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61897843	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61897851	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897852	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897853	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897854	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61897855	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61897856	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61897858	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61899284	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61899285	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61899293	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61899294	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47121600-47140200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47122400-47140400	Weak transcription	Pancreas	Pancrea
3	chr11:47124600-47159000	Weak transcription	Primary T cells from cord blood	blood
4	chr11:47128600-47140600	Weak transcription	NHEK	skin
5	chr11:47128800-47143400	Weak transcription	Gastric	stomach
6	chr11:47129400-47158000	Weak transcription	Aorta	Aorta
7	chr11:47129400-47158600	Weak transcription	Spleen	Spleen
8	chr11:47130000-47159000	Weak transcription	Hela-S3	cervix
9	chr11:47131000-47140400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:47131400-47135800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:47131400-47140400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:47131600-47134200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:47131600-47150400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:47131600-47155000	Weak transcription	Right Atrium	heart
15	chr11:47131600-47159400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:47131800-47150600	Weak transcription	Fetal Stomach	stomach
17	chr11:47131800-47161200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:47132400-47144800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:47132600-47155600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:47132800-47133800	Flanking Active TSS	GM12878-XiMat	blood
21	chr11:47133000-47133800	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr11:47133200-47140400	Weak transcription	Brain Inferior Temporal Lobe	brain

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