Variant report

Variant	rs61897843
Chromosome Location	chr11:47187549-47187550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47182976..47185487-chr11:47185518..47189747,4	MCF-7	breast:
2	chr11:47176348..47178224-chr11:47185293..47188253,2	K562	blood:

Variant related genes	Relation type
ENSG00000149179	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12578030	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17197619	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17197710	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17790306	0.82[EUR][1000 genomes]
rs17790336	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17790342	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17790390	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17790420	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4572092	0.82[EUR][1000 genomes]
rs4647713	0.92[AMR][1000 genomes]
rs57012996	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57964319	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60041842	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60088916	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60174717	0.85[EUR][1000 genomes]
rs60201196	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60335739	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61896124	0.82[EUR][1000 genomes]
rs61896125	0.82[EUR][1000 genomes]
rs61896126	0.85[EUR][1000 genomes]
rs61896131	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61896132	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61897776	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61897777	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61897782	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61897784	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61897786	0.89[EUR][1000 genomes]
rs61897788	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61897791	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61897851	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61897852	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61897853	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61897854	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61897855	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61897856	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61897858	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47165400-47188600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47175200-47188600	Weak transcription	Fetal Heart	heart
3	chr11:47175400-47197600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:47176000-47196600	Strong transcription	Fetal Intestine Small	intestine
5	chr11:47176200-47187800	Weak transcription	NHDF-Ad	bronchial
6	chr11:47176600-47188600	Weak transcription	Fetal Brain Male	brain
7	chr11:47176800-47193000	Strong transcription	Fetal Brain Female	brain
8	chr11:47176800-47196600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:47178000-47197000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:47178200-47194000	Strong transcription	Dnd41	blood
11	chr11:47178800-47196800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:47180600-47196600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:47180800-47188600	Weak transcription	K562	blood
14	chr11:47181400-47197000	Weak transcription	Right Atrium	heart
15	chr11:47182000-47196400	Strong transcription	Hela-S3	cervix
16	chr11:47182200-47193400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:47182200-47194800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:47182200-47197000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr11:47182400-47196400	Strong transcription	Fetal Intestine Large	intestine
20	chr11:47183200-47194000	Strong transcription	Primary B cells from peripheral blood	blood
21	chr11:47183200-47197000	Strong transcription	Placenta	Placenta
22	chr11:47183200-47197200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:47183400-47190400	Strong transcription	Brain Hippocampus Middle	brain
24	chr11:47183400-47190600	Strong transcription	Gastric	stomach
25	chr11:47183400-47192600	Strong transcription	Primary T cells from cord blood	blood
26	chr11:47183400-47192800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:47183400-47193000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr11:47183400-47193200	Strong transcription	Brain Cingulate Gyrus	brain
29	chr11:47183400-47193800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:47183400-47194600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:47183400-47194600	Strong transcription	Colonic Mucosa	Colon
32	chr11:47183400-47196600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:47183400-47197000	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:47183400-47197000	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr11:47183400-47197000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:47183600-47192000	Strong transcription	Primary hematopoietic stem cells	blood
37	chr11:47183600-47192800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:47183600-47193000	Strong transcription	Brain Substantia Nigra	brain
39	chr11:47183600-47193800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:47183600-47194200	Strong transcription	Fetal Thymus	thymus
41	chr11:47183600-47196400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:47183600-47196600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:47183600-47197000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:47183600-47197000	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr11:47183800-47196800	Strong transcription	NHLF	lung
46	chr11:47184000-47193000	Strong transcription	Esophagus	oesophagus
47	chr11:47184000-47193600	Strong transcription	Adipose Nuclei	Adipose
48	chr11:47184000-47194000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:47184000-47196800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr11:47184200-47191600	Strong transcription	Right Ventricle	heart

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