Variant report

Variant	rs61897853
Chromosome Location	chr11:47217906-47217907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47215606..47218098-chr11:47271095..47273524,2	MCF-7	breast:
2	chr11:47206234..47211366-chr11:47214484..47221177,8	MCF-7	breast:
3	chr11:47215905..47218060-chr17:80229934..80231728,2	MCF-7	breast:
4	chr11:47203798..47205420-chr11:47217251..47219556,2	MCF-7	breast:
5	chr11:47215846..47218054-chr11:47221296..47225306,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165912	Chromatin interaction
ENSG00000141551	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12574558	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12576831	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12576839	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12578030	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17197500	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17197619	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17197710	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17790246	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17790306	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17790336	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790342	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790390	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790420	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4572092	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4647713	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55968738	0.87[ASN][1000 genomes]
rs57012996	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57964319	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59689332	0.87[ASN][1000 genomes]
rs60041842	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60088916	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60174717	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60201196	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60335739	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61142746	0.87[ASN][1000 genomes]
rs61896120	0.93[ASN][1000 genomes]
rs61896121	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61896122	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61896124	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61896125	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61896126	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61896131	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896132	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897776	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897777	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897782	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897784	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897786	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61897788	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897791	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61897843	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61897851	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897852	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897854	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61897855	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61897856	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61897858	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61899284	0.87[ASN][1000 genomes]
rs61899285	0.87[ASN][1000 genomes]
rs61899293	0.87[ASN][1000 genomes]
rs61899294	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61897853	PACSIN3	cis	Esophagus Mucosa	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47210200-47226000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:47215800-47224000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:47216800-47222400	Weak transcription	Placenta	Placenta
4	chr11:47217800-47218200	Enhancers	Hela-S3	cervix

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