Variant report

Variant	rs61897857
Chromosome Location	chr11:47233458-47233459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47205689..47216568-chr11:47232414..47239487,27	MCF-7	breast:
2	chr11:47231611..47234324-chr11:47290633..47292856,2	K562	blood:

Variant related genes	Relation type
ENSG00000243802	Chromatin interaction
ENSG00000165912	Chromatin interaction
ENSG00000110514	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10501319	0.87[ASN][1000 genomes]
rs10742797	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769248	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838652	0.81[ASN][1000 genomes]
rs10838658	0.84[ASN][1000 genomes]
rs10838662	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10838663	0.86[ASN][1000 genomes]
rs10838664	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039080	0.81[ASN][1000 genomes]
rs11039081	0.83[ASN][1000 genomes]
rs11601798	0.87[ASN][1000 genomes]
rs11603373	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12417519	0.84[ASN][1000 genomes]
rs12574410	0.86[ASN][1000 genomes]
rs2087215	0.85[ASN][1000 genomes]
rs2279438	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2279439	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3758666	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758667	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3922684	0.84[ASN][1000 genomes]
rs4269876	0.84[ASN][1000 genomes]
rs4315028	0.83[ASN][1000 genomes]
rs4498951	0.84[ASN][1000 genomes]
rs4576779	0.83[ASN][1000 genomes]
rs4587689	0.84[ASN][1000 genomes]
rs4752965	0.86[ASN][1000 genomes]
rs4752969	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61896133	0.84[ASN][1000 genomes]
rs61896136	0.84[ASN][1000 genomes]
rs61897844	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6485726	0.81[ASN][1000 genomes]
rs7112854	0.84[ASN][1000 genomes]
rs7114683	0.81[ASN][1000 genomes]
rs7127741	0.81[ASN][1000 genomes]
rs7130006	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7937410	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7940240	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7950753	0.81[ASN][1000 genomes]
rs7951979	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs901747	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs923324	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47226400-47235800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:47226600-47234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:47227200-47235600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:47231600-47235200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:47232000-47235800	Weak transcription	HMEC	breast
6	chr11:47232400-47234400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:47232400-47235400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:47232400-47235600	Weak transcription	NHEK	skin
9	chr11:47233000-47235400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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