Variant report

Variant	rs61899284
Chromosome Location	chr11:46986975-46986976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12574558	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12576831	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12576839	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12578030	0.87[ASN][1000 genomes]
rs17197500	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17197619	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17197710	0.87[ASN][1000 genomes]
rs17790246	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17790306	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17790336	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17790342	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17790390	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17790420	0.90[ASN][1000 genomes]
rs4572092	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4647713	0.87[ASN][1000 genomes]
rs55968738	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57012996	0.90[ASN][1000 genomes]
rs57964319	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59689332	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60041842	0.90[ASN][1000 genomes]
rs60088916	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60174717	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60201196	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60335739	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61142746	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896120	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61896121	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61896122	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61896124	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61896125	0.93[ASN][1000 genomes]
rs61896126	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61896131	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61896132	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61897776	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61897777	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61897782	0.90[ASN][1000 genomes]
rs61897784	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61897786	0.82[ASN][1000 genomes]
rs61897788	0.90[ASN][1000 genomes]
rs61897791	0.85[ASN][1000 genomes]
rs61897851	0.90[ASN][1000 genomes]
rs61897852	0.90[ASN][1000 genomes]
rs61897853	0.87[ASN][1000 genomes]
rs61897854	0.84[ASN][1000 genomes]
rs61897855	0.87[ASN][1000 genomes]
rs61897856	0.87[ASN][1000 genomes]
rs61897858	0.87[ASN][1000 genomes]
rs61899285	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899293	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899294	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46959000-46998600	Weak transcription	Left Ventricle	heart
2	chr11:46959200-46990600	Weak transcription	Brain Angular Gyrus	brain
3	chr11:46959200-46990600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:46959200-46993800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:46970600-46993200	Weak transcription	Small Intestine	intestine
6	chr11:46971000-46992400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:46971600-46995600	Weak transcription	Pancreas	Pancrea
8	chr11:46971600-47006600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:46974000-46989600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:46974200-46987400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:46974200-46998600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:46974200-47008400	Weak transcription	Primary T cells from cord blood	blood
13	chr11:46980400-46998600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:46980400-46998600	Weak transcription	Thymus	Thymus
15	chr11:46980600-46990600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:46980600-46992600	Weak transcription	Fetal Lung	lung
17	chr11:46980600-46995400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:46980600-46995400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:46980600-46995400	Weak transcription	Fetal Stomach	stomach
20	chr11:46980600-46998600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:46980600-46999600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:46980600-47014000	Weak transcription	Aorta	Aorta
23	chr11:46980600-47021000	Weak transcription	Ovary	ovary
24	chr11:46980600-47026000	Weak transcription	HSMM	muscle
25	chr11:46981200-47023400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr11:46981400-46997400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:46982600-46997000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:46982800-46987200	Weak transcription	A549	lung
29	chr11:46982800-46993200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:46982800-46998400	Weak transcription	Fetal Brain Female	brain
31	chr11:46983000-46993400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:46983000-46993800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr11:46983000-46997000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:46983000-47024000	Weak transcription	Primary B cells from cord blood	blood
35	chr11:46983200-46993400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:46983400-46998600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:46984000-46997000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:46984800-46987200	Weak transcription	Hela-S3	cervix
39	chr11:46985000-46997400	Weak transcription	GM12878-XiMat	blood
40	chr11:46986400-46993800	Weak transcription	Fetal Intestine Small	intestine
41	chr11:46986600-46994800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:46986600-46995600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:46986600-46997400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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