Variant report

Variant	rs61899292
Chromosome Location	chr11:47036950-47036951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46867290..46869103-chr11:47036825..47039117,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247675	Chromatin interaction
ENSG00000175216	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10466476	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	1.00[ASN][1000 genomes]
rs11038987	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039012	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607429	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822959	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825434	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277006	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281784	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1352307	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16938534	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128315	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4463814	1.00[ASN][1000 genomes]
rs4500447	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647709	1.00[ASN][1000 genomes]
rs56311746	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59197251	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897302	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61899282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106323	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107703	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7108147	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111760	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112518	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115986	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123729	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128102	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928445	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667108	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026600-47042200	Weak transcription	Small Intestine	intestine
2	chr11:47026800-47041000	Weak transcription	Hela-S3	cervix
3	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:47027000-47040000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:47027200-47042000	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:47027400-47039600	Weak transcription	Osteobl	bone
7	chr11:47027400-47056000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:47027800-47048000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:47033000-47042000	Weak transcription	Fetal Lung	lung
10	chr11:47034400-47037000	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links