Variant report

Variant	rs61901983
Chromosome Location	chr11:56169741-56169742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs12272629	0.85[EUR][1000 genomes]
rs17541821	0.91[EUR][1000 genomes]
rs17541876	0.91[EUR][1000 genomes]
rs17546536	0.97[EUR][1000 genomes]
rs17613345	0.85[EUR][1000 genomes]
rs17627302	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17628586	0.98[EUR][1000 genomes]
rs17628691	0.98[EUR][1000 genomes]
rs17629033	0.97[EUR][1000 genomes]
rs17629218	0.97[EUR][1000 genomes]
rs1807254	0.98[EUR][1000 genomes]
rs55706115	0.91[EUR][1000 genomes]
rs55771448	0.98[EUR][1000 genomes]
rs56077409	0.91[EUR][1000 genomes]
rs56078926	0.97[EUR][1000 genomes]
rs56163075	0.97[EUR][1000 genomes]
rs56394926	0.92[EUR][1000 genomes]
rs61888282	0.85[EUR][1000 genomes]
rs61888286	0.85[EUR][1000 genomes]
rs61888289	0.85[EUR][1000 genomes]
rs61888309	0.85[EUR][1000 genomes]
rs61888312	0.85[EUR][1000 genomes]
rs61888313	0.85[EUR][1000 genomes]
rs61902021	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902022	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902171	0.94[EUR][1000 genomes]
rs61902203	0.94[EUR][1000 genomes]
rs61902209	0.94[EUR][1000 genomes]
rs61902863	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61902883	0.98[EUR][1000 genomes]
rs61902885	0.98[EUR][1000 genomes]
rs61902915	0.98[EUR][1000 genomes]
rs61902916	0.98[EUR][1000 genomes]
rs61902921	0.98[EUR][1000 genomes]
rs61903478	0.86[EUR][1000 genomes]
rs61903482	0.88[EUR][1000 genomes]
rs61903483	0.88[EUR][1000 genomes]
rs61903484	0.91[EUR][1000 genomes]
rs61903485	0.91[EUR][1000 genomes]
rs61903486	0.91[EUR][1000 genomes]
rs61903487	0.91[EUR][1000 genomes]
rs61903530	0.89[EUR][1000 genomes]
rs61903531	0.89[EUR][1000 genomes]
rs61903536	0.89[EUR][1000 genomes]
rs61903537	0.89[EUR][1000 genomes]
rs61903541	0.89[EUR][1000 genomes]
rs61904062	0.97[EUR][1000 genomes]
rs61904063	0.94[EUR][1000 genomes]
rs61904064	0.97[EUR][1000 genomes]
rs7103598	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106248	0.91[EUR][1000 genomes]
rs7114870	0.91[EUR][1000 genomes]
rs7121384	0.91[EUR][1000 genomes]
rs7121385	0.91[EUR][1000 genomes]
rs7121991	0.98[EUR][1000 genomes]
rs7124023	0.91[EUR][1000 genomes]
rs7125690	0.82[EUR][1000 genomes]
rs7126549	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7130906	0.97[EUR][1000 genomes]
rs716103	0.85[EUR][1000 genomes]
rs716104	0.85[EUR][1000 genomes]
rs7932621	0.85[EUR][1000 genomes]
rs7951134	0.85[EUR][1000 genomes]
rs7951506	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv555096	chr11:56084444-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
4	nsv555097	chr11:56084611-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
5	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56169600-56170000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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