Variant report

Variant	rs61902171
Chromosome Location	chr11:56326213-56326214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10501355	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17546536	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17548679	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17548700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17549606	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17627302	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17628586	0.95[EUR][1000 genomes]
rs17628691	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17629033	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17629218	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1807254	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55771448	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55874240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56078926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56163075	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56394926	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61901983	0.94[EUR][1000 genomes]
rs61902021	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61902022	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61902203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61902209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61902863	0.95[EUR][1000 genomes]
rs61902883	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61902885	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61902915	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61902916	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61902921	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61903268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903315	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903316	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61903320	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903321	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903541	0.83[EUR][1000 genomes]
rs61904062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61904063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61904064	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61904562	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61904563	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61904564	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61904565	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61904579	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61904584	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61904586	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61904587	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6591380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7103598	0.94[EUR][1000 genomes]
rs7114870	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7121991	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7126549	0.95[EUR][1000 genomes]
rs7130906	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7939771	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7951506	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv468576	chr11:56299930-56420029	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv555099	chr11:56299930-56420029	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv516558	chr11:56315297-56347636	Weak transcription Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	esv2421725	chr11:56323407-56354044	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv523453	chr11:56324576-56366677	Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56326200-56326600	Enhancers	Rectal Mucosa Donor 29	rectum

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