Variant report

Variant	rs61902517
Chromosome Location	chr11:56543773-56543774
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10501358	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17559037	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17559185	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17559600	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17640103	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55815178	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61889065	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61889069	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61889071	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61889072	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61889073	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61889075	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61889076	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61889078	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61889108	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61902501	0.90[EUR][1000 genomes]
rs61902503	0.90[EUR][1000 genomes]
rs61902504	0.90[EUR][1000 genomes]
rs61902556	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61903997	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61904579	0.83[EUR][1000 genomes]
rs61904584	0.87[EUR][1000 genomes]
rs61904586	0.87[EUR][1000 genomes]
rs61904587	0.87[EUR][1000 genomes]
rs7107067	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7116073	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7122752	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1048328	chr11:56471984-56649908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv2830406	chr11:56481955-56650124	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv982950	chr11:56543432-56546447	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56543600-56544200	Enhancers	Fetal Intestine Small	intestine

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